Job Description P0AEQ3 Confidence 23.46% Date Thu Jan 5 11:23:56 GMT 2012 Rank 121 Aligned Residues 176 % Identity 15% Template c2zzxD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:abc transporter, solute-binding protein; PDBTitle: crystal structure of a periplasmic substrate binding protein in2 complex with lactate Resolution 1.75 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.							.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																							.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	W	A	A	I	A	K	E	L	K	L	D	Y	E	L	K	P	M	D	F	.	.	.	.	.	.	S	G	I	I	P	A	L	Q	T	K	N	V	D	L	A	L	A	G	I	T	I	T	D	E	R	K	K	A	I	D	F	S	D	G	Y	Y	K	S	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																							.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	F	T	E	R	V	K	E	L	T	D	G	Q	L	E	V	Q	P	F	P	A	G	A	V	V	G	T	F	D	M	F	D	A	V	K	T	G	V	L	D	G	M	N	P	F	T	L	Y	W	A	G	R	M	P	V	T	A	F	L	S	S	Y	A	L	G	L	D	R	P	D	Q	W	E	T	W	F	Y	S	L	G
Template Known Secondary structure											T	T	T	S								T	T	S	S	S		G	G	G								T	S	S	S					B	G	G	G	G	T	T	T		G	G	G	G	G	S	S			T	T	S			S										T	S	S
Template Predicted Secondary structure
Template SS confidence
		3054	.	.	.	.	.	3060	.	.	.	.	.	.	.	.	.	3070	.	.	.	.	.	.	.	.	.	3080	.	.	.	.	.	.	.	.	.	3090	.	.	.	.	.	.	.	.	.	3100	.	.	.	.	.	.	.	.	.	3110	.	.	.	.	.	.	.	.	.	3120	.	.	.	.	.	.	.	.	.	3130	.	.	.
																							112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	V	M	V	K	A	N	N	N	D	V	K	S	V	K	D	L	D	G	K	V	V	A	V	K	S	G	T	G	S	V	D	Y	A	K	A	N	I	K	T	K	D	L	R	Q	F	P	N	I	D	N	A	Y	M	E	L	G	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.																				.	.	.
Template Conservation																																																.																				.	.	.
Template Sequence		G	L	D	I	A	R	R	A	F	A	E	Q	G	L	F	Y	V	G	P	V	Q	H	D	L	N	I	I	H	S	K	K	P	I	R	R	F	E	D	F	K	G	V	K	L	R	V	.	P	G	G	M	I	A	E	V	F	A	A	A	G	A	S	T	V	L	L	.	.	.	P	G	G	E	V	Y	P	A	L	E	R
Template Known Secondary structure												T	T	T																	S	S				S	G	G	G	G	T	T						.		S										T	T							.	.	.		G	G	G							T
Template Predicted Secondary structure																																																.																				.	.	.
Template SS confidence
		3134	.	.	.	.	.	3140	.	.	.	.	.	.	.	.	.	3150	.	.	.	.	.	.	.	.	.	3160	.	.	.	.	.	.	.	.	.	3170	.	.	.	.	.	.	.	.	.		3180	.	.	.	.	.	.	.	.	.	3190	.	.	.	.	.	.	.	.				.	3200	.	.	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.							.	.	.	.	.	.	210	.	.	.	.						.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																			.	.	.	.	.	.												.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.												.	.	.	.	.
Query Sequence		N	R	A	D	A	V	L	H	D	T	P	N	I	L	Y	F	I	K	T	A	G	N	G	Q	F	K	A	V	G	D	S	L	E	.	.	.	.	.	.	A	Q	Q	Y	G	I	A	F	P	K	G	.	.	.	.	.	S	D	E	L	R	D	K	V	N	G	A	L	K	T	L	R	E
Query Conservation																																			.	.	.	.	.	.												.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.												.	.	.	.	.
Template Conservation
Template Sequence		G	V	I	D	A	A	D	F	V	G	P	A	V	N	Y	N	L	G	F	H	Q	V	A	K	Y	I	I	M	G	P	P	E	T	P	A	I	H	Q	P	V	D	L	M	D	F	T	I	N	L	N	R	W	R	S	L	P	K	P	L	Q	E	R	F	I	A	A	V	H	E	Y	S	W
Template Known Secondary structure		T	S		S					S								T	T													T	T	S	S		S	S		S	S															S
Template Predicted Secondary structure
Template SS confidence
		3210	.	.	.	.	.	.	.	.	.	3220	.	.	.	.	.	.	.	.	.	3230	.	.	.	.	.	.	.	.	.	3240	.	.	.	.	.	.	.	.	.	3250	.	.	.	.	.	.	.	.	.	3260	.	.	.	.	.	.	.	.	.	3270	.	.	.	.	.	.	.	.	.	3280	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions