Job Description P0AEQ3 Confidence 95.31% Date Thu Jan 5 11:23:56 GMT 2012 Rank 61 Aligned Residues 216 % Identity 14% Template c2rejA_ PDB info PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation Resolution 2.60 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	K	K	L	V	V	A	T	D	T	A	F	V	P	F	E	F	K	Q	G	D	K	Y	V	G	F	D	V	D	L	W	A	A	I	A	K	E	L	K	L	D	Y	E	L	K	P	M	D	F	S	G	I	I	P	A	L	Q	T	K	N	V	D	L	A	L	A	G	I	T	I	T	D	E	R	K	K	A	I	D
Query Conservation
Alig confidence											.	.	.	.	.	.							.	.	.	.
Template Conservation											.	.	.	.	.	.							.	.	.	.
Template Sequence		S	C	G	T	V	R	F	S	D	.	.	.	.	.	.	V	G	W	T	D	I	.	.	.	.	T	A	T	T	A	T	A	T	T	I	L	E	A	L	G	Y	E	T	D	V	K	V	L	S	V	P	V	T	Y	T	S	L	K	N	K	D	I	D	V	F	L	G	N	W	M	P	T	M	E	A	D	I	A	P	Y
Template Known Secondary structure				S							.	.	.	.	.	.		S		T	T		.	.	.	.														T	T														T	S	S	T	T	T	T											S	T	T
Template Predicted Secondary structure											.	.	.	.	.	.							.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40							.	.	.	.	.	.					.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.											.	.	.	.	.	.	.								130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.							.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																							.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																							.	.	.	.	.	.
Query Sequence		F	S	D	G	Y	Y	K	S	G	L	L	V	M	V	K	A	N	N	N	D	.	.	.	.	.	.	.	.	.	.	V	K	S	V	K	D	L	.	.	.	.	.	.	.	D	G	K	V	V	A	V	K	S	G	T	G	S	V	D	Y	A	K	A	N	I	K	.	.	.	.	.	.	T	K	D	L	R	Q	F	P
Query Conservation																						.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																							.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.																							.	.	.	.	.	.
Template Conservation
Template Sequence		R	E	D	K	S	V	E	T	V	R	E	N	L	A	G	A	K	Y	T	L	A	T	N	A	K	G	A	E	L	G	I	K	D	F	K	D	I	A	A	H	K	D	E	L	D	G	K	I	Y	G	I	E	P	G	N	D	G	N	R	L	I	I	D	M	V	E	K	G	T	F	D	L	K	G	F	E	V	V	E	S
Template Known Secondary structure				T	T																										T			B	T	T	S	S	G	G	G		T	T	T		S							S	S											T	T	T	T		T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		160	.	.	.	.	.	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.					.	.	.	.	.	220	.	.
Predicted Secondary structure									.	.	.	.																										.	.																								.	.	.	.									.	.	.	.	.	.	.
Query SS confidence									.	.	.	.																										.	.																								.	.	.	.									.	.	.	.	.	.	.
Query Sequence		N	I	D	N	A	Y	M	.	.	.	.	E	L	G	T	N	R	A	D	A	V	L	H	D	T	P	N	I	L	Y	F	I	K	T	A	G	.	.	N	G	Q	F	K	A	V	G	D	S	L	E	A	Q	Q	Y	G	I	A	F	P	K	G	.	.	.	.	S	D	E	L	R	D	K	V	.	.	.	.	.	.	.
Query Conservation									.	.	.	.																										.	.																								.	.	.	.									.	.	.	.	.	.	.
Alig confidence									.	.	.	.																										.	.																								.	.	.	.									.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	E	Q	G	M	L	A	Q	V	A	R	A	E	K	S	G	D	P	I	V	F	L	G	W	E	P	H	P	M	N	A	N	F	K	L	T	Y	L	S	G	G	D	D	V	F	G	P	N	Y	G	G	A	T	V	H	T	N	V	R	A	G	Y	T	T	E	C	P	N	V	D	K	L	L	Q	N	L	S	F	S	L
Template Known Secondary structure														T	T	T	T										S	S	G	G	G	G	T	S						B	S			S	S	S		S	T	T	T										T	T					S								T	T
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
					223	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.												.
Query SS confidence		.	.	.												.
Query Sequence		.	.	.	N	G	A	L	K	T	L	R	E	N	G	.	T	Y	N	E	I	Y	K	K	W	F	G	T	E	P	K
Query Conservation		.	.	.												.
Alig confidence		.	.	.												.
Template Conservation
Template Sequence		Q	M	E	N	E	I	M	G	K	I	L	N	D	G	E	D	P	E	K	A	A	A	A	W	L	K	D	N	P	Q
Template Known Secondary structure									T	T	T	S	S	S				T	T					T	T	S	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions