Job Description P0AEQ3 Confidence 99.96% Date Thu Jan 5 11:23:56 GMT 2012 Rank 31 Aligned Residues 218 % Identity 21% Template c2rc9A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:glutamate [nmda] receptor subunit 3a; PDBTitle: crystal structure of the nr3a ligand binding core complex with acpc at2 1.96 angstrom resolution Resolution 1.96 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																																												.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	L	V	V	A	T	D	T	A	F	V	P	F	E	F	K	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	Y	V	G	F	D	V	D	L	W	A	A	I	A	K	E	L	K
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.
Template Sequence		H	L	R	V	V	T	.	L	I	E	H	P	F	V	F	T	R	E	V	D	D	E	G	L	C	P	A	G	Q	L	C	L	D	P	M	T	N	D	S	S	M	L	D	R	L	F	S	S	L	H	S	S	N	D	T	V	P	I	K	F	K	K	C	C	Y	G	Y	C	I	D	L	L	E	Q	L	A	E	D	M	N
Template Known Secondary structure								.			B	T	T	T	B							T	T	S	S		T	T	S																						T	S	S	S					G	G	G						S														T
Template Predicted Secondary structure								.
Template SS confidence
		6	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		63	.	.	.	.	.	.	70	.												.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.																																																										.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.																																																										.	.	.
Query Sequence		L	D	Y	E	L	K	P	M	D	.	.	.	.	.	.	.	.	.	.	.	F	S	G	I	I	P	A	L	Q	T	K	N	V	D	L	A	L	A	G	I	T	I	T	D	E	R	K	K	A	I	D	F	S	D	G	Y	Y	K	S	G	L	L	V	M	V	K	A	N	N	N	D	V	K	S	V	K	D	.	.	.
Query Conservation											.	.	.	.	.	.	.	.	.	.	.																																																										.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.																																																										.	.	.
Template Conservation
Template Sequence		F	D	F	D	L	Y	I	V	G	D	G	K	Y	G	A	W	K	N	G	H	W	T	G	L	V	G	D	L	L	S	G	T	A	N	M	A	V	T	S	F	S	I	N	T	A	R	S	Q	V	I	D	F	T	S	P	F	F	S	T	S	L	G	I	L	V	R	T	R	G	T	E	L	S	G	I	H	D	P	K	L
Template Known Secondary structure										T	T								T	T												T	S		S				S	S		B							T	T	S				S		S											T	T	S					S	T	T
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
					129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.					.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																										.	.	.	.																					.	.
Query SS confidence		.	.	.																										.	.	.	.																					.	.
Query Sequence		.	.	.	L	D	G	K	V	V	A	V	K	S	G	T	G	S	V	D	Y	A	K	A	N	I	K	T	K	.	.	.	.	D	L	R	Q	F	P	N	I	D	N	A	Y	M	E	L	G	T	N	R	A	.	.	D	A	V	L	H	D	T	P	N	I	L	Y	F	I	K	T	A	G	N	G	Q	F	K	A	V	G
Query Conservation		.	.	.																										.	.	.	.																					.	.
Alig confidence		.	.	.																										.	.	.	.																					.	.
Template Conservation
Template Sequence		H	H	P	S	Q	G	F	R	F	G	T	V	R	E	S	S	A	E	D	Y	V	R	Q	S	F	P	E	M	H	E	Y	M	R	R	Y	N	V	P	A	T	P	D	G	V	Q	Y	L	K	N	D	P	E	K	L	D	A	F	I	M	D	K	A	L	L	D	Y	E	V	S	I	D	A	D	C	K	L	L	T	V	G
Template Known Secondary structure			S			T	T						B	T	T	S																		G	G	G		B	S	S										S	S	S				S																	S	S							S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	L	E	A	Q	Q	Y	G	I	A	F	P	K	G	S	D	E	L	R	D	K	V	N	G	A	L	K	T	L	R	E	N	G	T	Y	N	E	I	Y	K	K	W	F	G	T
Query Conservation
Alig confidence																			.
Template Conservation																			.
Template Sequence		K	P	F	A	I	E	G	Y	G	I	G	L	P	P	N	S	P	.	L	T	S	N	I	S	E	L	I	S	Q	Y	K	S	H	G	F	M	D	V	L	H	D	K	W	Y	K	V
Template Known Secondary structure															T	T		T	.	T														T	T										T	T
Template Predicted Secondary structure																			.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions