Job Description P0AEQ3 Confidence 97.10% Date Thu Jan 5 11:23:56 GMT 2012 Rank 52 Aligned Residues 192 % Identity 11% Template c2g29A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 Resolution 1.50 Å

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		57	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.						.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.											.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.											.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	A	K	E	L	K	L	.	D	Y	E	L	K	P	M	D	F	S	.	.	.	.	.	G	I	I	P	A	L	Q	T	K	N	V	D	L	A	L	A	G	I	T	I	T	D	E	R	K	K	A	I	D	F	S	D	G	Y	Y	K	S	G	L	L	V	M	V	K	A	N	.	.	.	.	.	.	.	.	.	.	.
Query Conservation									.											.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.											.	.	.	.	.																																															.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	Y	A	K	Y	G	M	P	D	V	E	V	L	K	Q	A	S	W	G	T	T	R	D	N	L	V	L	G	S	A	S	G	G	I	D	G	A	H	I	L	T	P	M	P	Y	L	I	T	M	G	T	V	T	D	G	K	P	T	P	M	Y	I	L	A	R	L	N	V	N	G	Q	G	I	Q	L	G	N	N	Y	K
Template Known Secondary structure						T	T		T	T							S													G	G	G	T	S		S						T										T	T	S	S	S													B	S								G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
										120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.									150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	N	N	D	V	K	S	V	K	D	L	D	G	K	V	V	A	V	K	S	G	T	G	S	V	D	Y	A	K	A	N	.	.	.	.	.	.	.	.	I	K	T	K	D	L	R	Q	F	P	N	I	D	N	A	Y	M	E	L	G	T	N	R	A	D	A	V	L	H	D	T	P	N	I
Query Conservation		.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	L	K	V	G	T	D	A	A	P	L	K	E	A	F	A	K	V	T	D	P	K	V	A	M	T	F	P	G	G	T	H	D	M	W	I	R	Y	W	L	A	A	G	G	M	E	P	G	K	D	F	S	T	I	V	V	P	P	A	Q	M	V	A	N	V	K	V	N	A	M	E	S	F	C	V	G	E	P	W	P
Template Known Secondary structure		G	G				S			T	T							T	S	S	S						S	S	T	T	S													T	T			B	T	T	T	B							G	G	G							T	T	S		S						T	T
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.					.	.	.	.	.	220	.	.	.	.	.	.	.	.	.								230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.
Predicted Secondary structure																										.								.	.	.	.																.	.	.	.	.	.	.												.	.
Query SS confidence																										.								.	.	.	.																.	.	.	.	.	.	.												.	.
Query Sequence		L	Y	F	I	K	T	A	G	N	G	Q	F	K	A	V	G	D	S	L	E	A	Q	Q	Y	.	G	I	A	F	P	K	G	.	.	.	.	S	D	E	L	R	D	K	V	N	G	A	L	K	T	L	.	.	.	.	.	.	.	R	E	N	G	T	Y	N	E	I	Y	K	.	.	K	W	F	G	T	E	P	K
Query Conservation																										.								.	.	.	.																.	.	.	.	.	.	.												.	.
Alig confidence																										.								.	.	.	.																.	.	.	.	.	.	.												.	.
Template Conservation
Template Sequence		L	Q	T	V	N	Q	G	V	G	Y	Q	A	L	T	T	G	Q	L	W	K	D	H	P	E	K	A	F	G	M	R	A	D	W	V	D	Q	N	P	K	A	A	K	A	L	L	M	A	V	M	E	A	Q	Q	W	C	D	Q	A	E	N	K	E	E	M	C	Q	I	L	S	K	R	E	W	F	K	V	P	F	E
Template Known Secondary structure								T	S							G	G	G	T	B	T	T		B																																			G	G	G										S	T	T	T	T				G	G
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions