Job Description P0AEQ3 Confidence 92.99% Date Thu Jan 5 11:23:56 GMT 2012 Rank 68 Aligned Residues 100 % Identity 18% Template c2f5xC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:bugd; PDBTitle: structure of periplasmic binding protein bugd Resolution 1.72 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200																				.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	V	D	Y	A	K	A	N	I	K	T	K	D	L	R	Q	F	P	N	I	D	N	A	Y	M	E	L	G	T	N	R	A	D	A	V	L	H	D	T	P	N	I	L	Y	F	I	K	T	A	G	N	G	Q	F	K	A	V	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	X	L	V	E	A	L	G	V	N	L	L	T	I	P	Y	K	G	T	A	P	A	X	N	D	L	L	G	K	Q	V	D	L	X	C	D	Q	T	T	N	T	T	Q	Q	I	T	S	G	K	V	K	A	Y	A	V	T	S	L	K	R	V	P	T	L	P	D	L	P	T	X	D	E	S	G	Y	K	G	F	E
Template Known Secondary structure										T									S	S										T	T	S	S																	T	S								S	S	S			T	T	S	T	T	S		B	T	T	T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		203	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		E	A	Q	Q	Y	G	I	A	F	P	K	G	.	S	D	E	L	R	D	K	V	N	G	A	L	K	T	L	R	E	N	G	T	Y	N	E	I	Y	K	K
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		V	G	I	W	H	G	X	W	A	P	K	G	T	P	K	P	V	V	D	K	L	V	K	S	L	Q	A	G	L	A	D	P	K	F	Q	E	R	X	K	Q
Template Known Secondary structure												T	T
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions