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Job DescriptionP0AEQ3
Confidence99.97%DateThu Jan 5 11:23:56 GMT 2012
Rank25Aligned Residues226
% Identity22%Templatec1xt8B_
PDB info PDB header:transport proteinChain: B: PDB Molecule:putative amino-acid transporter periplasmic solute-binding PDBTitle: crystal structure of cysteine-binding protein from campylobacter2 jejuni at 2.0 a resolution
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30.........40.. .......50.........60.... .....70.........80.........90..
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Query Sequence  AVSSHAADKKLVVATDTAFVPFEFKQ. GDKYVGFDVDLWAAIAKELKLD. . . YELKPMDFSGIIPALQTKNVDLALAGIT
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Template Sequence  SLDKIKQNGVVRIGVFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKVDIILANFT
Template Known Secondary structure  SS
STTT
TTS
SS
TT


GGGTTS
S
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B
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   12.......20.........30.........40.........50.........60.........70.........80.........90.
 
   93......100.........110.........120.........130.........140.........150.........160.........170..
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Query Sequence  ITDERKKAIDFSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNR
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Template Sequence  QTPQRAEQVDFCSPYMKVALGVAVPKD. SNITSVEDLKDKTLLLNKGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKR
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   92.......100.........110........ .120.........130.........140.........150.........160.........170
 
   173......180.........190.........200.........210.........220.........230.........240....
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Query Sequence  ADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGALKTLRENGTYNEIYKKWFG
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Template Sequence  GDALSHDNTLLFAWVKDHP. DFKMGIKELGNKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLK
Template Known Secondary structure  SS
T.T

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   171........180......... 190.........200.........210.........220.........230.........240.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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