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Job DescriptionP68187
Confidence100.00%DateThu Jan 5 12:10:57 GMT 2012
Rank43Aligned Residues214
% Identity29%Templatec3b5xB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae
Resolution5.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10... ......20.........30.........40.........50.........60.........70.... ...
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Query Sequence  ASVQLQNVTKAW. . GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE. . RGV
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Template Sequence  GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF
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B

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   340.........350.........360.........370.........380.........390.........400.........410.........
 
   78.80.........90.........100.........110.........120.........130.. .......140......
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Query Sequence  GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK. . . . . . . . . . . ALSGGQRQRVAIGR
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Template Sequence  ALVSQNVHLFND. TIANNIAYA. . . . . AEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR
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   147..150.........160.........170.........180.........190.........200.........210.........220....
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Query Sequence  TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY
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Template Sequence  ALLRDAPVLILDEATSALDTESERAIQAALDELQK. . NKTVLVIAHRLSTI. EQADEILVVDEGEIIERGRHADLLAQ
Template Known Secondary structure  T


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   494.....500.........510.........520........ .530.........540.. .......550.........560........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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