Job Description P32125 Confidence 97.93% Date Thu Jan 5 11:49:12 GMT 2012 Rank 149 Aligned Residues 122 % Identity 18% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	F	A	A	W	S	G	T	G	K	T	T	L	L	K	K	L	I	P	A	L	C	A	R	G	I	R	P	G	L	I	K	H	T	H	H	D	M	D	V	D	K	P	G	K	D	S	Y	E	L	R	K	A	G	A	A	Q	T	I	V	A	S	Q	Q	R	W	A	L	M	T	E	T	P	D	E	E	E	L
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	Y	K	V	G	L	V	A	A	D	.	.	.	.	.	.	.	.	.	.	.	.	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y	G	E	P	N	N	Q	N	P	I	E
Template Known Secondary structure								S	S	S	S	S	S	T	T	T										T	T	S					B					.	.	.	.	.	.	.	.	.	.	.	.		S	S	S		S											T	T							S	S				T	T
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.													.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	Q	F	L	A	S	R	M	D	T	S	K	L	D	L	I	L	V	E	G	F	K	H	E	E	I	A	K	I	V	L	F	R	D	G	A	G	H	R	P	E	E	L	V	I	D	R	H	V	I	A	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D
Template Known Secondary structure													T	T		S									S			S	S	T																		S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions