Return to main results Retrieve Phyre Job Id

Job DescriptionP38035
Confidence99.58%DateThu Jan 5 11:57:48 GMT 2012
Rank34Aligned Residues90
% Identity13%Templated1ntca_
SCOP infoDNA/RNA-binding 3-helical bundle Homeodomain-like FIS-like
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   407..410.........420.........430.........440.........450.........460.........470.........480......
Predicted Secondary structure 










































Query SS confidence 















































































Query Sequence  TWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKS
Query Conservation   







   
           
    
                                     
   
   
   
Alig confidence 








............






















.............






















Template Conservation 


    
 ............        

             .............          
   
   

  
Template Sequence  DLPGELFEA. . . . . . . . . . . . STPDSPSHLPPDSWATLLAQWAD. . . . . . . . . . . . . RALRSGHQNLLSEAQPELERTLL
Template Known Secondary structure 
SS





............
SSS








.............TTT

S
Template Predicted Secondary structure 



............











.............





Template SS confidence 















































































   380........ .390.........400.........410. ........420.........430....
 
   487..490.........500.........510.........520.
Predicted Secondary structure 








Query SS confidence 


































Query Sequence  LSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT
Query Conservation    

    

   

  




 

 


   

 
Alig confidence 


































Template Conservation    

    

   

  




 

  






 
Template Sequence  TTALRHTQGHKQEAARLLGWGAATLTAKLKELGME
Template Known Secondary structure  TTT
TTTT


Template Predicted Secondary structure 








Template SS confidence 


































   435....440.........450.........460.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions