Job Description P38035 Confidence 99.08% Date Thu Jan 5 11:57:48 GMT 2012 Rank 67 Aligned Residues 206 % Identity 17% Template c3u5zM_ PDB info PDB header:dna binding protein/dna Chain: M: PDB Molecule:dna polymerase accessory protein 44; PDBTitle: structure of t4 bacteriophage clamp loader bound to the t4 clamp,2 primer-template dna, and atp analog Resolution 3.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	R	N	P	H	F	N	R	M	I	E	Q	I	E	K	V	A	I	K	S	R	A	P	I	L	L	N	G	P	T	G	A	G	K	S	F	L	A	R	R	I	L	E	L	K	Q	A	R	H	Q	F	S	G	A	F	V	E	V	N	C	A	T	L	R	G	D	T	A	M	S	T	L	F	G	H	V	K	G	A
Query Conservation
Alig confidence																				.																															.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Conservation																				.																															.	.	.	.	.	.																			.	.	.	.	.	.	.
Template Sequence		C	I	L	P	A	F	D	K	E	T	F	K	S	I	T	S	K	G	.	K	I	P	H	I	I	L	H	S	P	S	P	G	T	G	K	T	T	V	A	K	A	L	C	H	D	V	N	A	D	.	.	.	.	.	.	M	M	F	V	N	G	S	D	C	K	I	D	F	V	R	G	P	L	.	.	.	.	.	.	.
Template Known Secondary structure		S																	S	.	S									S	S	S		S	S												T	T			.	.	.	.	.	.						G	G	G								T			.	.	.	.	.	.	.
Template Predicted Secondary structure																				.																															.	.	.	.	.	.																			.	.	.	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70							.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	G	A	R	E	S	R	E	G	L	L	R	S	A	N	G	G	M	L	F	L	D	E	I	G	E	L	G	A	D	E	Q	A	M	L	L	K	A	I	E	E	K	T	F	Y	P	F	G	S	D	R	Q	V	S	S	D	F	Q	L	I	A	G	T	V	R	D	L	R	Q	L	V	A	E	G	K	F	R	E	D
Query Conservation
Alig confidence		.	.	.	.																																									.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																									.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Sequence		.	.	.	.	T	N	F	A	S	A	A	S	F	D	G	R	Q	K	V	I	V	I	D	E	F	D	R	S	G	L	A	E	S	Q	R	H	L	R	S	F	M	E	A	Y	.	.	.	.	.	.	.	.	.	.	S	S	N	C	S	I	I	I	T	A	N	N	.	.	.	.	.	.	.	I	D	G	I	I	K	P
Template Known Secondary structure		.	.	.	.						S			T	T										S				G	G	G														T	.	.	.	.	.	.	.	.	.	.	T	T	T								S		.	.	.	.	.	.	.	G	G	G	S
Template Predicted Secondary structure		.	.	.	.																																									.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template SS confidence
						89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.											.	130	.	.	.	.	.	.	.	.	.	140								.	.	.	.	.	.	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	A	R	I	N	L	W	T	F	T	L	P	G	L	R	Q	R	Q	E	D	I	E	P	N	L	D	Y	E	V	E	R	H	A	S	L	T	G	D	S	V	R	F	N	T	E	A	R	R	A	W	L	A	F	A	T	S	P	Q	A	T	W	R	G	N	F	R	E	L	S	A	S	V	T	R	M	A	T	F	A
Query Conservation
Alig confidence																																									.	.														.	.	.	.	.	.	.
Template Conservation																																									.	.														.	.	.	.	.	.	.
Template Sequence		L	Q	S	R	C	R	V	I	T	F	G	Q	P	T	D	E	D	K	I	E	M	M	K	Q	M	I	R	R	L	T	E	I	C	K	H	E	G	I	A	.	.	I	A	D	M	K	V	V	A	A	L	V	K	K	.	.	.	.	.	.	.	N	F	P	D	F	R	K	T	I	G	E	L	D	S	Y	S	S	K	G
Template Known Secondary structure						S					T	T																										T			.	.		S		S										.	.	.	.	.	.	.	T		S												T		T	T	S
Template Predicted Secondary structure																																									.	.														.	.	.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.	.	.	.	.								200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		427	.	.	430	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	G	R	I	T	L	D	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	D	A	G	I	L	S	L	V
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions