Job Description P38035 Confidence 98.27% Date Thu Jan 5 11:57:48 GMT 2012 Rank 100 Aligned Residues 181 % Identity 14% Template c3qmzA_ PDB info PDB header:motor protein Chain: A: PDB Molecule:cytoplasmic dynein heavy chain; PDBTitle: crystal structure of the cytoplasmic dynein heavy chain motor domain Resolution 6.00 Å

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		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		A	I	K	S	R	A	P	I	L	L	N	G	P	T	G	A	G	K	S	F	L	A	R	R	I	L	E	L	K	Q	A	R	H	Q	F	S	G	A	F	V	E	V	N	C	A	.	T	L	R	G	D	T	A	M	S	T	L	F	G	H	V	K	G	A	F	T	G	A	R	E	S	R	E	G	L	L	R	S	A	N
Query Conservation																																															.
Alig confidence																																	.	.	.	.	.	.									.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	L	H	Q	K	Y	G	G	C	F	F	G	P	A	G	T	G	K	T	E	T	V	K	A	F	G	Q	N	L	G	R	.	.	.	.	.	.	V	V	V	V	F	N	C	D	D	S	F	D	Y	Q	V	L	S	R	L	L	V	G	I	T	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I
Template Known Secondary structure					T	T	T	T							T	T	S	S									T	S	S				.	.	.	.	.	.								S	S	S	S		S												T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1785	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.							.	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840																		.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.										.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.
Query Sequence		G	G	M	L	F	L	D	E	I	G	E	L	G	A	D	E	Q	A	M	L	L	K	A	I	E	E	.	.	.	.	.	.	.	.	.	K	T	F	Y	P	F	G	S	D	R	Q	V	S	S	D	F	Q	L	I	A	G	T	V	R	D	L	R	Q	L	V	A	E	G	K	F	R	E	D	L	Y	A	R	I	N	L
Query Conservation																												.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	W	G	C	F	D	E	F	N	R	L	D	E	K	V	L	S	A	V	S	A	N	I	Q	Q	I	Q	N	G	L	Q	V	G	K	S	H	I	T	L	L	E	E	E	T	P	L	S	P	H	T	A	V	F	I	T	L	.	.	.	.	.	.	.	.	.	.	.	.	L	P	E	N	L	K	K	S	F	R	E
Template Known Secondary structure									T	T	T	T	S	S																	T	S	T	T	S	S	S						S	S															.	.	.	.	.	.	.	.	.	.	.	.							T	T	T
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1842	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.													.	1900	.	.	.	.	.	.	.	.	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		W	T	F	T	L	P	G	L	R	Q	R	Q	E	D	I	E	P	N	L	D	Y	E	V	E	.	.	R	H	A	S	L	T	G	D	S	V	R	F	N	T	E	A	R	R	A	W	L	A	F	A	T	S	P	Q	A	T	W	R	G	N	F	R	E	L	S	A	S	V	T	R	M	A	T	F	A	T	S	G
Query Conservation																										.	.
Alig confidence					.					.																.	.																					.	.	.	.	.	.							.	.
Template Conservation					.					.																																						.	.	.	.	.	.							.	.
Template Sequence		F	S	M	.	K	S	Q	S	.	G	T	I	A	E	M	I	L	Q	I	M	G	F	E	D	S	K	S	L	A	S	K	I	V	H	F	L	E	L	L	S	S	K	C	S	S	M	.	.	.	.	.	.	N	H	Y	H	F	G	.	.	L	R	T	L	K	G	V	L	R	N	C	S	P	L	I	S	E	F
Template Known Secondary structure					.					.													T	S	S																					S	S	.	.	.	.	.	.	S						.	.																		S
Template Predicted Secondary structure					.					.																																						.	.	.	.	.	.							.	.
Template SS confidence
		1919	1920	.		.	.	.	.		.	.	.	.	1930	.	.	.	.	.	.	.	.	.	1940	.	.	.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960	.	.							.	.	.	.	.	.			.	1970	.	.	.	.	.	.	.	.	.	1980	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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