Job Description P38035 Confidence 99.95% Date Thu Jan 5 11:57:48 GMT 2012 Rank 6 Aligned Residues 131 % Identity 19% Template c3co5B_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:putative two-component system transcriptional response PDBTitle: crystal structure of sigma-54 interaction domain of putative2 transcriptional response regulator from neisseria gonorrhoeae Resolution 2.40 Å

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		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	H	F	N	R	M	I	E	Q	I	E	K	V	A	I	K	S	R	A	P	I	L	L	N	G	P	T	G	A	G	K	S	F	L	A	R	R	I	L	E	L	K	Q	A	R	H	Q	F	S	G	A	F	V	E	V	N	C	A	T	L	R	G	D	T	A	M	S	T	L	F	G	H	V	K	G	A	F	T	G
Query Conservation
Alig confidence																	.																													.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.																													.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	A	I	Q	E	X	N	R	E	V	E	A	A	A	.	K	R	T	S	P	V	F	L	T	G	E	A	G	S	P	F	E	T	V	A	R	Y	F	H	K	N	G	T	.	.	.	P	W	V	S	P	A	R	V	E	Y	L	I	D	X	P	X	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																	.	T		S	S								T	T									T	T			T	T	S	.	.	.						S	S	T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																	.																													.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	E	S	R	E	G	L	L	R	S	A	N	G	G	M	L	F	L	D	E	I	G	E	L	G	A	D	E	Q	A	M	L	L	K	A	I	E	E	K	T	F	Y	P	F	G	S	D	R	Q	V	S	S	D	F	Q	L	I	A	G	T	V	R	D	L	R	Q	L	V	A	E	G	K	F	R	E	D	L	Y	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	L	Q	K	A	E	G	G	V	L	Y	V	G	D	I	A	Q	Y	S	R	N	I	Q	T	G	I	T	F	I	I	G	K	A	E	.	.	.	.	.	.	.	.	.	.	R	C	R	V	R	V	I	A	S	C	S	Y	A	A	.	.	.	.	G	S	D	S	C	E	E	K	L	A	G
Template Known Secondary structure		.	.	.	.	.	.	.	.				T	T	T	S								T	T																	T	.	.	.	.	.	.	.	.	.	.	T	T	T											T	.	.	.	.	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template SS confidence
										200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.											.	.	.	.	.	.	.	240	.	.	.	.	.	.					.	.	.	250	.	.	.	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	N	L	W	T	F	T	L	P	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	S	E	S	V	V	R	I	P	P	L
Template Known Secondary structure			S	S	S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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