Job Description P38035 Confidence 99.66% Date Thu Jan 5 11:57:48 GMT 2012 Rank 26 Aligned Residues 390 % Identity 17% Template c3cf1C_ PDB info PDB header:transport protein Chain: C: PDB Molecule:transitional endoplasmic reticulum atpase; PDBTitle: structure of p97/vcp in complex with adp/adp.alfx Resolution 4.40 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.										60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.
Query Sequence		G	F	V	G	T	V	L	D	Y	A	G	R	G	S	Q	R	W	S	K	W	R	P	T	L	C	L	C	Q	Q	E	S	L	V	I	D	R	L	E	L	L	H	D	A	R	S	R	S	L	F	E	T	L	.	.	.	.	.	.	.	.	.	K	R	D	I	A	S	V	S	P	E	T	E	V	V	S	V	E	I	E
Query Conservation																																																						.	.	.	.	.	.	.	.	.
Alig confidence																																																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	A	G	E	S	E	S	N	L	R	K	A	F	E	E	A	E	K	N	A	P	A	I	I	F	I	D	E	L	D	A	I	A	P	K	R	E	K	T	H	G	E	V	E	R	R	I	V	S	Q	L	L	T	L	M	D	G	L	K	Q	R	A	H	V	I	V	M	A	A	T	N	R	P	N	S	I	D	P	A
Template Known Secondary structure		S		T	T																T		S							T	G	G	G	T				S	S				S															T	T	T	T	S	T	T									S		T	T	T	S		G	G
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.												.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	H	N	P	W	D	F	E	E	.	.	.	.	.	.	.	.	.	.	.	V	Y	A	C	L	H	D	F	A	R	G	Y	E	F	Q	P	E	K	E	D	Y	L	I	H	I	T	T	G	T	H	V	A	Q	I	C	W	F	L	L	A	E	A	R	Y	L	P	A	R	L	I	Q	S	S	P	P	R	K	K	E	Q
Query Conservation											.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	R	F	G	R	F	D	R	E	V	D	I	G	I	P	D	A	T	G	R	L	E	I	L	Q	I	H	T	K	N	M	K	L	A	D	D	V	D	L	E	Q	V	A	N	E	T	H	G	H	V	G	A	D	L	A	A	L	C	S	E	A	A	L	Q	A	I	R	K	K	M	D	L	I	D	L	E	D	E	T
Template Known Secondary structure		G		S	T	T	S	S																						S	S	S	S				T	T								T	T		T	T			T	T																					T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.												.	.	.	.	.	.	210	.	.
Predicted Secondary structure																																									.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	R	G	P	G	E	V	T	I	I	D	L	D	L	S	R	Y	N	A	I	A	S	R	F	A	E	E	R	Q	Q	T	L	D	F	L	K	S	G	I	.	.	.	.	A	T	R	N	P	H	F	N	R	M	I	E	Q	I	E	K	V	.	.	.	.	.	.	.	.	.	.	.	A	I	K	S	R	A	P	I	L
Query Conservation																																									.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																																					.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.
Template Sequence		I	D	.	A	E	V	M	N	S	L	A	V	T	M	D	D	F	R	W	A	L	S	Q	S	N	P	S	A	L	R	E	T	V	V	E	V	P	Q	V	T	W	E	D	I	G	G	L	E	D	V	K	R	E	L	Q	E	L	V	Q	Y	P	V	E	H	P	D	K	F	L	K	F	G	M	T	P	S	K	G	V	L
Template Known Secondary structure				.																									S			S										T	T	T	T		S																								T	S						S
Template Predicted Secondary structure				.
Template SS confidence
		437	.		.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	G	P	T	G	A	G	K	S	F	L	A	R	R	I	L	E	L	K	Q	A	R	H	Q	F	S	G	A	F	V	E	V	N	C	A	T	L	R	G	D	T	A	M	S	T	L	F	G	H	V	K	G	A	F	T	G	A	R	E	S	R	E	G	L	L	R	S	A	N	G	G	M	L	F	L	D	E	I	G
Query Conservation
Alig confidence																						.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Template Sequence		F	Y	G	P	P	G	C	G	K	T	L	L	A	K	A	I	A	N	E	C	.	.	.	.	.	.	Q	A	N	F	I	S	I	K	G	P	.	.	.	.	.	.	.	.	.	E	L	L	T	M	W	F	G	E	S	E	A	N	V	R	E	I	F	D	K	A	R	Q	A	A	P	C	V	L	F	F	D	E	L	D
Template Known Secondary structure						T	T	S													T	.	.	.	.	.	.	T										.	.	.	.	.	.	.	.	.							T	T	T		T							T	T	T	T	T	T	T		S						S	S	G	G
Template Predicted Secondary structure																						.	.	.	.	.	.											.	.	.	.	.	.	.	.	.
Template SS confidence
		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.							.	.	.	.	540	.	.	.	.	.										.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
		293	.	.	.	.															.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.		.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.				.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.				.
Query Sequence		E	L	G	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	A	M	L	L	K	A	I	E	E	K	T	F	Y	P	F	G	S	D	R	Q	V	S	S	D	F	Q	L	I	A	G	T	V	R	D	L	R	Q	L	V	A	E	G	K	F	R	E	D	L	Y	A	.	.	R	I	N	.	L	W	T
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.				.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.											.	.				.
Template Conservation																																.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Template Sequence		S	I	A	K	A	R	G	G	N	I	G	D	G	G	G	A	A	D	R	V	I	N	Q	I	L	T	E	M	D	G	.	.	.	.	.	.	.	.	.	M	S	T	K	K	N	V	F	I	I	G	A	T	N	R	.	.	.	.	.	.	.	P	D	I	I	D	P	A	I	L	R	P	G	R	L	D	Q	L	I	Y
Template Known Secondary structure		G	G					T	T	T	T		S	S			S														S	.	.	.	.	.	.	.	.	.	S		T	T	S	S								S		.	.	.	.	.	.	.	G	G	G			G	G	G	T	S	T	T	T	S
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Template SS confidence
		581	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610										.	.	.	.	.	.	.	.	.	620	.	.	.	.	.								.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.									.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.
Query Sequence		F	T	L	P	G	L	R	Q	R	Q	E	D	I	E	P	N	L	D	Y	E	V	E	R	H	A	S	L	T	G	D	S	V	R	F	N	T	E	A	R	R	A	W	L	A	F	A	T	S	P	Q	A	T	W	R	G	N	F	R	E	L	S	A	S	V	T	R	M	A	T	F	A	.	.	.	.	.	.	.	.	T
Query Conservation																																																																									.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.																													.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Sequence		I	P	L	P	D	E	K	S	R	V	.	.	.	.	.	.	.	.	.	.	.	.	A	I	L	K	A	N	L	R	K	S	P	V	A	K	D	V	.	.	.	.	.	D	L	E	F	L	A	K	M	T	N	G	F	S	G	A	D	L	T	E	I	C	Q	R	A	C	K	L	A	I	R	E	S	I	E	S	E	I
Template Known Secondary structure							T	T				.	.	.	.	.	.	.	.	.	.	.	.							T	T	T	S		B		S	S		.	.	.	.	.						T	T	T		S	S															T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template SS confidence
		645	.	.	.	.	650	.	.	.	.													.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670						.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	R	I	T	L	D	V	V	E	D	E	I	N	R	L	R	Y	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	E	I	R	R	D	H	F	E	E	A	M	R	F	A	R	R	S
Template Known Secondary structure					B										T	T				S
Template Predicted Secondary structure
Template SS confidence
		728	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.