Job Description P38035 Confidence 99.62% Date Thu Jan 5 11:57:48 GMT 2012 Rank 29 Aligned Residues 215 % Identity 15% Template c3bosA_ PDB info PDB header:hydrolase regulator,dna binding protein Chain: A: PDB Molecule:putative dna replication factor; PDBTitle: crystal structure of a putative dna replication regulator hda2 (sama_1916) from shewanella amazonensis sb2b at 1.75 a resolution Resolution 1.75 Å

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		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	D	F	L	K	S	G	I	A	T	R	N	P	H	F	N	R	M	I	E	Q	I	E	K	V	A	I	K	S	R	A	P	I	L	L	N	G	P	T	G	A	G	K	S	F	L	A	R	R	I	L	E	L	K	Q	A	R	H	Q	F	S	G	A	F	V	E	V	N	C	A	T	L	R	G	D	T	A	M	S
Query Conservation
Alig confidence																											.	.																														.	.	.																	.	.	.	.	.
Template Conservation																											.	.																														.	.	.																	.	.	.	.	.
Template Sequence		P	D	D	E	T	F	T	S	Y	Y	P	G	N	D	E	L	I	G	A	L	K	S	A	A	S	.	.	G	D	G	V	Q	A	I	Y	L	W	G	P	V	K	S	G	R	T	H	L	I	H	A	A	C	A	R	A	N	.	.	.	E	L	E	R	R	S	F	Y	I	P	L	G	I	H	A	S	.	.	.	.	.
Template Known Secondary structure			T	T		S	T	T	T	S																	.	.	T		S		S							S	T	T	S	S														.	.	.		T	T								G	G	G	G	G	G	.	.	.	.	.
Template Predicted Secondary structure																											.	.																														.	.	.																	.	.	.	.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.			.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	F	G	H	V	K	G	A	F	T	G	A	R	E	S	R	E	G	L	L	R	S	A	N	G	G	M	L	F	L	D	E	I	G	E	L	G	A	D	E	Q	A	M	L	L	K	A	I	E	E	K	T	F	Y	P	F	G	S	D	R	Q	V	S	S	D	F	Q	L	I	A	G	T	V	R	D	L	R	Q	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation		.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Sequence		.	.	.	.	.	.	.	.	I	S	T	A	L	L	E	G	L	E	Q	F	D	L	I	C	I	D	D	V	D	A	V	A	G	H	P	L	W	E	E	A	I	F	D	L	Y	N	R	V	A	E	Q	K	R	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	L	I	V	S	A	S	A	S	P	X	E	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	S		G	G	G	G	T	T	G	G	G	S	S						T	G	G	G	G	T	T																				S	.	.	.	.	.	.	.	.	.	.	.	.	.								S	S		T	T	T	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template SS confidence
										93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.														.	.	140	.	.	.	.	.	.	.	.	.	150
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		V	A	E	G	K	F	R	E	D	L	Y	A	R	I	N	.	L	W	T	F	T	L	P	G	L	R	Q	R	Q	E	D	I	E	P	N	L	D	Y	E	V	E	R	H	A	S	L	T	G	D	S	V	R	F	N	T	E	A	R	R	A	W	L	A	F	A	T	S	P	Q	A	T	W	R	G	N	F	R	E	L	S
Query Conservation																	.
Alig confidence		.	.														.												.	.																	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation		.	.																										.	.																	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Sequence		.	.	A	G	F	V	L	P	D	L	V	S	R	X	H	W	G	L	T	Y	Q	L	Q	P	X	X	D	.	.	D	E	K	L	A	A	L	Q	R	R	A	A	X	R	G	L	.	.	.	.	.	.	Q	L	P	E	D	V	G	R	F	L	L	N	R	.	.	.	.	.	.	.	X	A	R	D	L	R	T	L	F
Template Known Secondary structure		.	.	T	T													S										G	.	.	G	G												T	T		.	.	.	.	.	.														.	.	.	.	.	.	.	T	T	T
Template Predicted Secondary structure		.	.																										.	.																	.	.	.	.	.	.														.	.	.	.	.	.	.
Template SS confidence
				151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.							.	.	.	.	.	.	.	.	200	.	.	.	.								.	.	.	.	.	210	.	.	.
		417	.	.	420	.	.	.	.	.	.	.			.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		A	S	V	T	R	M	A	T	F	A	T	.	.	S	G	R	I	T	L	D	V	V	E	D	E	I	N
Query Conservation													.	.
Alig confidence													.	.
Template Conservation
Template Sequence		D	V	L	D	R	L	D	K	A	S	X	V	H	Q	R	K	L	T	I	P	F	V	K	E	X	L	R
Template Known Secondary structure															T													T
Template Predicted Secondary structure
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions