Job Description P38035 Confidence 98.82% Date Thu Jan 5 11:57:48 GMT 2012 Rank 84 Aligned Residues 188 % Identity 18% Template c2zamA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form Resolution 3.50 Å

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		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.											.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.																																																			.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.																																																			.	.
Query Sequence		A	T	R	N	P	H	F	N	R	M	I	E	Q	I	E	K	V	.	.	.	.	.	.	.	.	.	.	A	I	K	S	R	A	P	I	L	L	N	G	P	T	G	A	G	K	S	F	L	A	R	R	I	L	E	L	K	Q	A	R	H	Q	F	S	G	A	F	V	E	V	N	C	A	T	L	R	G	D	.	.	T
Query Conservation																			.	.	.	.	.	.	.	.	.	.																																																			.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.																.	.
Template Conservation																																																										.	.	.	.	.	.
Template Sequence		V	A	G	L	E	G	A	K	E	A	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	.	.	.	.	.	.	N	N	S	T	F	F	S	I	S	S	S	D	L	V	S	S	E	K
Template Known Secondary structure		S		S												T							G	G	G	S		S	S					S							S	T	T	S													T	.	.	.	.	.	.	T	T									S	T	T	T				T
Template Predicted Secondary structure																																																										.	.	.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.							.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.			.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		A	M	S	T	L	F	G	H	V	K	G	A	F	T	G	A	R	E	S	R	E	G	L	L	R	S	A	N	G	G	M	L	F	L	D	E	I	G	E	L	G	.	.	A	D	E	Q	A	M	L	L	K	A	I	E	E	K	T	F	Y	P	F	G	S	D	R	Q	V	S	S	D	F	Q	L	I	A	G	T	V	R
Query Conservation																																											.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.
Template Sequence		L	V	K	N	L	F	Q	L	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	K	P	S	I	I	F	I	D	E	I	D	S	S	E	A	A	R	R	I	K	T	E	F	L	V	Q	M	Q	G	V	G	.	.	.	.	.	.	.	.	V	D	N	D	G	I	L	V	L	G	A	T	N	I
Template Known Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T		S							S																				T	S	S	.	.	.	.	.	.	.	.	S			T	T								S
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.																.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.									.	.	260	.	.	.	.	.	.	.	.	.	270	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		D	L	R	Q	L	V	A	E	G	K	F	R	E	D	L	Y	A	R	I	N	.	L	W	T	F	T	L	P	G	L	R	Q	R	Q	E	D	I	E	P	N	L	D	Y	E	V	E	R	H	A	S	L	T	G	D	S	V	R	F	N	T	E	A	R	R	A	W	L	A	F	A	T	S	P	Q	A	T	W	R	G	N
Query Conservation																						.
Alig confidence		.	.	.	.	.	.	.														.																					.	.	.	.	.	.	.	.	.	.																		.	.	.	.								.
Template Conservation		.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.																		.	.	.	.								.
Template Sequence		.	.	.	.	.	.	.	P	W	V	L	D	S	A	I	R	R	R	F	E	K	R	I	Y	I	P	L	P	E	A	H	A	R	A	A	M	F	R	L	H	L	.	.	.	.	.	.	.	.	.	.	G	S	T	Q	N	S	L	T	E	A	D	F	Q	E	L	G	R	.	.	.	.	K	T	D	G	Y	S	G	.
Template Known Secondary structure		.	.	.	.	.	.	.		T	T	S									S										S												.	.	.	.	.	.	.	.	.	.	T	T			B													.	.	.	.	S			S				.
Template Predicted Secondary structure		.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.																		.	.	.	.								.
Template SS confidence
									281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.											.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.					.	.	.	.	.	.	.
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	E	L	S	A	S	V	T	R	M	A	T	F	A
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	A	D	I	S	I	I	V	R	D	A	L	M	Q	P
Template Known Secondary structure		.
Template Predicted Secondary structure		.
Template SS confidence
			339	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions