Job Description P38035 Confidence 99.63% Date Thu Jan 5 11:57:48 GMT 2012 Rank 28 Aligned Residues 229 % Identity 14% Template c2z4rB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa Resolution 3.05 Å

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		179	180	.	.	.	.	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		L	D	F	L	K	S	G	I	A	T	R	N	P	.	.	H	F	N	R	M	I	E	Q	I	E	K	V	A	I	K	S	R	A	P	I	L	L	N	G	P	T	G	A	G	K	S	F	L	A	R	R	I	L	E	L	K	Q	A	R	H	Q	F	S	G	A	F	V	E	V	N	C	A	T	L	R	G	D	T	A	M
Query Conservation															.	.
Alig confidence															.	.														.																												.
Template Conservation																														.																												.
Template Sequence		P	D	Y	T	F	E	N	F	V	V	G	P	G	N	S	F	A	Y	H	A	A	L	E	V	A	K	H	P	.	G	R	Y	N	P	L	F	I	Y	G	G	V	G	L	G	K	T	H	L	L	Q	S	I	G	N	Y	V	.	V	Q	N	E	P	D	L	R	V	M	Y	I	T	S	E	K	F	L	N	D	L	V	D
Template Known Secondary structure		S	S		S	G	G	G					T	T	T													S	T	.	T	T	S								S	S	S	S	S													.				S	S	S	S
Template Predicted Secondary structure																														.																												.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	L	F	G	H	V	K	G	A	F	T	G	A	R	E	S	R	E	G	L	L	R	S	A	N	G	G	M	L	F	L	D	E	I	G	E	L	G	A	D	E	Q	A	M	L	L	K	A	I	E	E	K	T	F	Y	P	F	G	S	D	R	Q	V	S	S	D	F	Q	L	I	A	G	T	V	R	D	L	R	Q
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.
Template Sequence		S	M	K	E	G	.	.	.	.	.	.	.	.	.	K	L	N	E	F	R	E	K	Y	R	K	K	V	D	I	L	L	I	D	D	V	Q	F	L	I	G	K	T	G	V	Q	T	E	L	F	H	T	F	N	E	L	H	.	.	.	.	.	.	.	.	D	S	G	K	Q	I	V	I	C	S	D	R	E	P	Q	K
Template Known Secondary structure					T	S	.	.	.	.	.	.	.	.	.										T	T	T		S							G	G	G	G	T	T																	.	.	.	.	.	.	.	.	T	T	T								S	S		T	T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.																																											.	.	.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.										.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.									.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	A	E	G	K	F	R	E	D	L	Y	A	R	I	N	L	W	T	F	T	L	P	G	L	R	Q	R	Q	E	D	I	E	P	N	L	D	Y	E	V	E	R	H	A	S	L	T	G	D	S	V	R	F	N	T	E	A	R	R	A	W	L	A	F	A	T	S	P	Q	A	T	W	R	G	N	F	R	E	L	S
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Template Sequence		L	S	E	F	Q	D	R	L	V	S	R	F	Q	M	G	L	V	A	K	L	E	P	P	D	E	E	T	R	K	S	I	A	R	K	M	L	E	I	E	.	.	.	.	.	.	.	.	.	.	H	G	E	L	P	E	E	V	L	N	F	V	A	E	N	.	.	.	.	.	.	.	V	D	D	N	L	R	R	L	R
Template Known Secondary structure			S	S											S	S																									.	.	.	.	.	.	.	.	.	.	T					T	T									.	.	.	.	.	.	.			S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.											280	.	.	.	.	.	.	.	.	.	290	.	.	.	.								.	.	.	.	.	300	.	.	.
		417	.	.	420	.	.	.	.			.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		A	S	V	T	R	M	A	T	.	.	F	A	T	S	G	R	I	T	L	D	V	V	E	D	E	I	N	R	L
Query Conservation										.	.
Alig confidence										.	.
Template Conservation
Template Sequence		G	A	I	I	K	L	L	V	Y	K	E	T	T	G	K	E	V	D	L	K	E	A	I	L	L	L	K	D	F
Template Known Secondary structure														S	S	S											T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions