Job Description P38035 Confidence 99.07% Date Thu Jan 5 11:57:48 GMT 2012 Rank 69 Aligned Residues 220 % Identity 18% Template c2x8aA_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain Resolution 2.60 Å

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		187	.	.	190	.	.	.	.	.	.	.	.	.												200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	R	N	P	H	F	N	R	M	I	E	Q	.	.	.	.	.	.	.	.	.	.	.	I	E	K	V	A	I	K	S	R	A	P	I	L	L	N	G	P	T	G	A	G	K	S	F	L	A	R	R	I	L	E	L	K	Q	A	R	H	Q	F	S	G	A	F	V	E	V	N	C	A	T	L	R	G	D	T	A
Query Conservation															.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.
Template Sequence		I	G	A	L	E	D	I	R	E	E	L	T	M	A	I	L	A	P	V	R	N	P	D	Q	F	K	A	L	G	L	V	T	P	A	G	V	L	L	A	G	P	P	G	C	G	K	T	L	L	A	K	A	V	A	N	E	S	.	.	.	.	.	.	G	L	N	F	I	S	V	K	G	P	E	L	L	N	M	Y	V
Template Known Secondary structure																	T					S							T	T					S						S	S	T	T	S													T	.	.	.	.	.	.	T								T	T	T	T		S	S	T	T
Template Predicted Secondary structure																																																											.	.	.	.	.	.
Template SS confidence
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.							640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	T	L	F	G	H	V	K	G	A	F	T	G	A	R	E	S	R	E	G	L	L	R	S	A	N	G	G	M	L	F	L	D	E	I	G	E	L	G	A	D	E	Q	A	M	L	L	K	A	I	E	E	K	T	F	Y	P	F	G	S	D	R	Q	V	S	S	D	F	Q	L	I	A	G	T	V	R	D	L	R
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.																		.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.																		.	.	.
Template Sequence		G	E	S	E	R	A	.	.	.	.	.	.	.	.	.	V	R	Q	V	F	Q	R	A	K	N	S	A	P	C	V	I	F	F	D	E	V	D	A	L	C	P	S	V	R	V	V	N	Q	L	L	T	E	M	.	.	.	.	.	.	.	D	G	L	E	A	R	Q	Q	V	F	I	M	A	A	T	N	R	.	.	.
Template Known Secondary structure								.	.	.	.	.	.	.	.	.											T		S							T		T	T	T				T	T										.	.	.	.	.	.	.		T			S	T	T									S		.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.																		.	.	.
Template SS confidence
		657	.	.	660	.	.										.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700								.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.
Predicted Secondary structure																				.																																																										.
Query SS confidence																				.																																																										.
Query Sequence		Q	L	V	A	E	G	K	F	R	E	D	L	Y	A	R	I	N	L	.	W	T	F	T	L	P	G	L	R	Q	R	Q	E	D	I	E	P	N	L	D	Y	E	V	E	R	H	A	S	L	T	G	D	S	V	R	F	N	T	E	A	R	R	A	W	L	A	F	A	T	S	P	Q	A	T	W	R	G	.	N	F	R
Query Conservation																				.																																																										.
Alig confidence		.	.	.	.															.											.	.																														.	.	.	.	.	.	.	.	.								.
Template Conservation		.	.	.	.																										.	.																														.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	P	D	I	I	D	P	A	I	L	R	P	G	R	L	D	K	T	L	F	V	G	L	P	P	P	.	.	A	D	R	L	A	I	L	K	T	I	T	K	N	G	T	K	P	P	L	D	A	D	V	N	L	E	A	I	A	.	.	.	.	.	.	.	.	.	G	D	L	R	C	D	C	Y	T	G	A
Template Known Secondary structure		.	.	.	.	G	G	G	S						S	T	T	S	S								S				.	.											T	T	T	T	B	T	T	B	B		T	T								.	.	.	.	.	.	.	.	.	T		S	G	G	G	S
Template Predicted Secondary structure		.	.	.	.																										.	.																														.	.	.	.	.	.	.	.	.
Template SS confidence
						727	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.			.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780										.	.	.	.	.	.	.	.	.	790	.
		414	.	.	.	.	.	420	.	.	.	.	.	.				.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence		E	L	S	A	S	V	T	R	M	A	T	F	A	.	.	.	T	S	G	R	I	T	L	D	V	V	E	D	E	I	N	R	L	R	Y	N
Query Conservation															.	.	.
Alig confidence															.	.	.
Template Conservation
Template Sequence		D	L	S	A	L	V	R	E	A	S	I	C	A	L	R	Q	E	M	L	K	V	S	H	K	H	F	E	E	A	F	K	K	V	R	S	S
Template Known Secondary structure																						B										T	T
Template Predicted Secondary structure
Template SS confidence
		792	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions