Job Description P38035 Confidence 99.67% Date Thu Jan 5 11:57:48 GMT 2012 Rank 24 Aligned Residues 206 % Identity 17% Template c2hcbC_ PDB info PDB header:replication Chain: C: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of amppcp-bound dnaa from aquifex aeolicus Resolution 3.51 Å

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		179	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		L	D	F	L	K	S	G	I	A	T	R	.	.	N	P	H	F	N	R	M	I	E	Q	I	E	K	V	A	I	K	S	R	A	P	I	L	L	N	G	P	T	G	A	G	K	S	F	L	A	R	R	I	L	E	L	K	Q	A	R	H	Q	F	S	G	A	F	V	E	V	N	C	A	T	L	R	G	D	T	A	M
Query Conservation													.	.
Alig confidence													.	.																																													.	.	.														.	.	.	.	.
Template Conservation																																																											.	.	.														.	.	.	.	.
Template Sequence		P	K	Y	T	L	E	N	F	I	V	G	E	G	N	R	L	A	Y	E	V	V	K	E	A	L	E	N	L	G	S	L	Y	N	P	I	F	I	Y	G	S	V	G	T	G	K	T	H	L	L	Q	A	A	G	N	E	A	K	.	.	.	K	R	G	Y	R	V	I	Y	S	S	A	D	D	.	.	.	.	.	F	A
Template Known Secondary structure		T	T			S	S	S	S				T	T	T										T	T	T	T	T	T	T	S									S	S	S	S	S														.	.	.		T	T											.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.														.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.				.	.	140	.	.	.	.	.	.	.	.	.	150						.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	L	F	G	H	V	K	G	A	F	T	G	A	R	E	S	R	E	G	L	L	R	S	A	N	G	G	M	L	F	L	D	E	I	G	E	L	G	A	D	E	Q	A	M	L	L	K	A	I	E	E	K	T	F	Y	P	F	G	S	D	R	Q	V	S	S	D	F	Q	L	I	A	G	T	V	R	D	L	R	Q
Query Conservation
Alig confidence																				.	.	.	.	.																																					.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.																																					.	.	.	.	.	.	.	.
Template Sequence		Q	A	M	V	E	H	L	K	K	G	T	I	N	E	F	R	N	M	.	.	.	.	.	Y	K	S	V	D	L	L	L	L	D	D	V	Q	F	L	S	G	K	E	R	T	Q	I	E	F	F	H	I	F	N	T	L	Y	L	L	E	.	.	.	.	.	.	.	.	K	Q	I	I	L	A	S	D	R	H	P	Q	K
Template Known Secondary structure											T									.	.	.	.	.			T		S							G	G	G	G	T	T		S																T	T	.	.	.	.	.	.	.	.								S	S		G	G	G
Template Predicted Secondary structure																				.	.	.	.	.																																					.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170						.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.									.	.	.	210	.	.	.	.	.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.			.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		L	V	A	E	G	K	F	R	E	D	L	Y	A	R	I	N	L	W	T	F	T	L	.	.	P	G	L	R	Q	R	Q	E	D	I	E	P	N	L	D	Y	E	V	E	R	H	A	S	L	T	G	D	S	V	R	F	N	T	E	A	R	R	A	W	L	A	F	A	T	S	P	Q	A	T	W	R	G	N	F	R	E
Query Conservation																								.	.
Alig confidence			.	.	.																			.	.																	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation			.	.	.																																					.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Sequence		L	.	.	.	D	G	V	S	D	R	L	V	S	R	F	E	G	G	I	L	V	E	I	E	L	D	N	K	T	R	F	K	I	I	K	E	K	L	K	E	.	.	.	.	.	.	.	.	.	.	F	N	L	E	L	R	K	E	V	I	D	Y	L	L	E	.	.	.	.	.	.	.	.	N	T	K	N	V	R	E
Template Known Secondary structure			.	.	.	T	T	S											S									S														.	.	.	.	.	.	.	.	.	.	T	T														.	.	.	.	.	.	.	.				S
Template Predicted Secondary structure			.	.	.																																					.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template SS confidence
		220				.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.											.	.	.	260	.	.	.	.	.	.	.	.	.	270	.									.	.	.	.	.	.	.
		415	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	A	S	V	T	R	M	A	T	F	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	G	K	I	K	L	I	K	L	K	G
Template Known Secondary structure										T	T	S
Template Predicted Secondary structure
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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