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Job DescriptionP38035
Confidence87.23%DateThu Jan 5 11:57:48 GMT 2012
Rank391Aligned Residues137
% Identity19%Templatec2eyqA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  QQTLDFLKSGIATRNPHFNRMIEQIEK. VAIKSRAPILLNGPTGAGKSFLA. RRILELKQARHQFSGAFVEVNCATLRGD
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Template Sequence  YQLFCDSFPFETT. . PDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV. . . AVLVPTTLLAQQ
Template Known Secondary structure  T

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   590.........600.. .......610.........620.........630.........640.........650.. .......660....
 
   254... ..260... ......270.........280.........290.........300....
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Query Sequence  TAMS. . TLFGHV. . . . . . . . . . . . . . . . . . . . . . . . . . . KGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK
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Template Sequence  HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKA
Template Known Secondary structure  STTTT

STTS
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   665....670.........680.........690.........700.........710.........720.........730.........740....
 
   305....310.........320.........330
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Query Sequence  AIEEKTFYPFGSDRQVSSDFQLIAGT
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Template Sequence  MRAN. . . . . . . . . . . . . VDILTLTAT
Template Known Secondary structure  TT.............SSS
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   745... .750.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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