Job Description P38035 Confidence 98.90% Date Thu Jan 5 11:57:48 GMT 2012 Rank 77 Aligned Residues 200 % Identity 20% Template c2chvE_ PDB info PDB header:dna-binding protein Chain: E: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c adpnp complex Resolution 4.00 Å

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		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		L	K	S	G	I	A	T	R	N	P	H	F	N	R	M	I	E	Q	I	E	K	V	A	I	K	S	R	A	P	.	I	L	L	N	G	P	T	G	A	G	K	S	F	L	A	R	R	I	L	E	L	K	Q	A	R	H	Q	F	S	G	A	F	V	E	V	N	C	A	T	L	R	G	D	T	A	M	S	T	L	F
Query Conservation																															.
Alig confidence											.	.	.	.																	.																										.
Template Conservation											.	.	.	.																																											.
Template Sequence		T	L	D	E	V	V	G	Q	D	.	.	.	.	E	V	I	Q	R	L	K	G	Y	V	E	R	K	N	I	P	H	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	F	G	E	.	N	W	R	D	N	F	I	E	M	N	A	S	D	E	R	G	I	D	V	V	R	H	K	I
Template Known Secondary structure		S	G	G	G			S			.	.	.	.							G	G	G	T	T	T	T											T	T	S	S														T	T	.			T	T	T						T	T	S	T	T	S	T	T	T	S	S
Template Predicted Secondary structure											.	.	.	.																																											.
Template SS confidence
		15	.	.	.	.	20	.	.	.					.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	V	K	G	A	F	T	G	A	R	E	S	R	E	G	L	L	R	S	A	N	G	G	M	L	F	L	D	E	I	G	E	L	G	A	D	E	Q	A	M	L	L	K	A	I	E	E	K	T	F	Y	P	F	G	S	D	R	Q	V	S	S	D	F	Q	L	I	A	G	T	V	R	D	L	R	Q	L	V	A	E
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Sequence		K	.	.	.	.	.	.	.	.	.	E	F	A	R	T	A	P	I	G	G	A	P	F	K	I	I	F	L	D	E	A	D	A	L	T	A	D	A	Q	A	A	L	R	R	T	M	E	M	Y	S	.	.	.	.	.	.	.	.	.	.	.	K	S	C	R	F	I	L	S	C	N	Y	.	.	.	.	.	.	.	V
Template Known Secondary structure			.	.	.	.	.	.	.	.	.					S			T	T	T										T	G	G	G	S							T	T	G	G	G	T	S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	S	S								S		.	.	.	.	.	.	.	G
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template SS confidence
		90										.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130												.	.	.	.	.	.	.	.	.	140	.								.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	F	R	E	D	L	Y	A	R	I	N	L	W	T	F	T	L	P	G	L	R	Q	R	Q	E	D	I	E	P	N	L	D	Y	E	V	E	R	H	A	S	L	T	G	D	S	V	R	F	N	T	E	A	R	R	A	W	L	A	F	A	T	S	P	Q	A	T	W	R	G	N	F	R	E	L	S	A	S	V	T
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Sequence		S	R	I	I	E	P	I	Q	S	R	C	A	V	F	R	F	K	P	V	P	K	E	A	M	K	K	R	L	L	E	I	.	.	.	.	.	.	.	.	.	.	C	E	K	E	G	V	K	I	T	E	D	G	L	E	A	L	I	Y	I	.	.	.	.	.	.	.	S	G	G	D	F	R	K	A	I	N	A	L	Q
Template Known Secondary structure		G	G	S						T	T																						.	.	.	.	.	.	.	.	.	.			T	T	T			B												.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.											.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.								.	.	.	.	.	.	.	200	.	.	.	.	.
		421	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	A	T	F	A	T	S	G	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	A	A	I	G	E	V	V	D
Template Known Secondary structure					S	S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions