Job Description P38035 Confidence 99.34% Date Thu Jan 5 11:57:48 GMT 2012 Rank 43 Aligned Residues 213 % Identity 19% Template c2chgB_ PDB info PDB header:dna-binding protein Chain: B: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c domains 1 and 2 Resolution 2.1 Å

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		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	L	K	S	G	I	A	T	R	N	P	H	F	N	R	M	I	E	Q	I	E	K	V	A	I	K	S	R	A	P	I	L	L	N	G	P	T	G	A	G	K	S	F	L	A	R	R	I	L	E	L	K	Q	A	R	H	Q	F	S	G	A	F	V	E	V	N	C	A	T	L	R	G	D	T	A	M	S	T	L
Query Conservation
Alig confidence																									.	.	.																															.
Template Conservation																									.	.	.																															.
Template Sequence		P	R	T	L	D	E	V	V	G	Q	D	E	V	I	Q	R	L	K	G	Y	V	E	R	.	.	.	K	N	I	P	H	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	F	G	E	.	N	W	R	D	N	F	I	E	M	N	A	S	D	E	R	G	I	D	V	V	R	H	K
Template Known Secondary structure			S	S	G	G	G			S														T	.	.	.	T									S		T	T	S	S														G	G	.	G	T	G	G	G						T	T		T	T
Template Predicted Secondary structure																									.	.	.																															.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.				.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	H	V	K	G	A	F	T	G	A	R	E	S	R	E	G	L	L	R	S	A	N	G	G	M	L	F	L	D	E	I	G	E	L	G	A	D	E	Q	A	M	L	L	K	A	I	E	E	K	T	F	Y	P	F	G	S	D	R	Q	V	S	S	D	F	Q	L	I	A	G	T	V	R	D	L	R	Q	L	V	A
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Sequence		I	K	E	F	A	R	T	A	P	I	G	G	A	P	F	K	.	.	.	.	.	.	.	.	.	I	I	F	L	D	E	A	D	A	L	T	A	D	A	Q	A	A	L	R	R	T	M	E	M	Y	S	.	.	.	.	.	.	.	.	.	.	.	K	S	C	R	F	I	L	S	C	N	Y	.	.	.	.	.	.	.
Template Known Secondary structure							T	S			S	T	T		S			.	.	.	.	.	.	.	.	.						T	G	G	G	S																T	.	.	.	.	.	.	.	.	.	.	.	T	T								S		.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.										.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130												.	.	.	.	.	.	.	.	.	140	.
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	K	F	R	E	D	L	Y	A	R	I	N	L	W	T	F	T	L	P	G	L	R	Q	R	Q	E	D	I	E	P	N	L	D	Y	E	V	E	R	H	A	S	L	T	G	D	S	V	R	F	N	T	E	A	R	R	A	W	L	A	F	A	T	S	P	Q	A	T	W	R	G	N	F	R	E	L	S	A	S	V
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.															.	.														.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.															.	.														.	.	.	.	.	.	.
Template Sequence		V	S	R	I	I	E	P	I	Q	S	R	C	A	V	F	R	F	K	P	V	P	K	E	A	.	.	.	.	.	.	.	.	M	K	K	R	L	L	E	I	C	E	K	E	G	V	.	.	K	I	T	E	D	G	L	E	A	L	I	Y	I	.	.	.	.	.	.	.	S	G	G	D	F	R	K	A	I	N	A	L
Template Known Secondary structure		G	G	G	S							T														.	.	.	.	.	.	.	.													T		.	.														.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.															.	.														.	.	.	.	.	.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.									.	.	.	.	170	.	.	.	.	.	.	.	.	.			180	.	.	.	.	.	.	.	.	.	190	.	.								.	.	.	.	.	.	.	200	.	.	.	.
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	M	A	T	F	A	T	S	G	R	I	T	L	D	V	V	E	D	E	I	N	R
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		Q	G	A	A	.	.	A	I	G	E	V	V	D	A	D	T	I	Y	Q	I	T	A	T
Template Known Secondary structure						.	.	T	T		S
Template Predicted Secondary structure						.	.
Template SS confidence
		205	.	.	.			.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions