Phyre 2 alignment of P38035 with c1xxiF

Job Description P38035
Confidence 96.01% Date Thu Jan 5 11:57:48 GMT 2012

Rank 120 Aligned Residues 250

% Identity 14% Template c1xxiF_

PDB info PDB header:transferase Chain: F: PDB Molecule:dna polymerase iii, delta subunit; PDBTitle: adp bound e. coli clamp loader complex

Resolution 4.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.					.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.
Query SS confidence																																		.	.	.	.
Query Sequence	I	L	L	N	G	P	T	G	A	G	K	S	F	L	A	R	R	I	L	E	L	K	Q	A	R	H	Q	F	S	G	A	F	V	.	.	.	.	E	V	N	C	A	T	L	R	G	D	T	A	M	S	T	L	F	G	H	V	K	G	A	F	T	G	A	R	E	S	R	E	G	L	L	R	S	A	N	G	G	M	L
Query Conservation																																		.	.	.	.
Alig confidence																																		.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Y	L	L	L	G	N	D	P	L	L	L	Q	E	S	Q	D	A	V	R	Q	V	A	A	A	Q	G	F	E	E	H	H	T	F	S	I	D	P	N	T	D	W	N	A	I	F	S	L	C	Q	A	M	S	L	F	A	S	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L
Template Known Secondary structure						S																				T										S	S																	S		S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.																					.	80

	287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.									.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.
Query Sequence	F	L	D	E	I	G	E	L	G	A	D	E	Q	A	M	L	L	K	A	I	E	E	K	T	F	Y	P	F	G	S	D	R	Q	V	S	S	D	F	Q	L	I	A	G	T	V	R	D	.	.	.	.	.	.	.	.	L	R	Q	L	V	A	E	G	K	F	R	E	D	L	Y	A	R	I	N	L	W	T	F	T	L
Query Conservation																																																.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence	L	L	L	L	P	E	N	G	P	N	A	A	I	N	E	Q	L	L	T	L	T	G	L	L	.	.	.	.	.	.	.	.	.	.	H	D	D	L	L	L	I	V	R	G	N	K	L	S	K	A	Q	E	N	A	A	W	F	T	A	L	A	N	R	.	.	.	.	.	.	.	.	.	.	.	S	V	Q	V	T	C
Template Known Secondary structure						S	S		S		T	T										T	T		.	.	.	.	.	.	.	.	.	.		S	S								S				T	T	T	T	T	S							T	T	T	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.											.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.												.	.	.	.	.	.

	359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	G	L	R	Q	R	Q	E	D	I	E	P	N	L	D	Y	E	V	E	R	H	A	S	L	T	G	D	S	V	R	F	N	T	E	A	R	R	A	W	L	A	F	A	T	S	P	Q	A	T	W	R	G	N	F	R	E	L	S	A	S	V	T	R	M	A	T	F	A	T	S	G	R	I	T	L	D	V	V	E	D
Query Conservation
Alig confidence								.	.	.	.	.	.															.	.														.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.															.	.														.	.	.	.	.	.	.
Template Sequence	Q	T	P	E	Q	A	Q	.	.	.	.	.	.	L	P	R	W	V	A	A	R	A	K	Q	L	N	L	.	.	E	L	D	D	A	A	N	Q	V	L	C	Y	C	.	.	.	.	.	.	.	Y	E	G	N	L	L	A	L	A	Q	A	L	E	R	L	S	L	L	W	P	D	G	K	L	T	L	P	R	V	E	Q
Template Known Secondary structure					T	T		.	.	.	.	.	.												T	T		.	.													S	.	.	.	.	.	.	.	S	T	T																	T	T
Template Predicted Secondary structure								.	.	.	.	.	.															.	.														.	.	.	.	.	.	.
Template SS confidence
	140	.	.	.	.	.	.							.	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.								.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

	439	440	.	.	.	.	.	.	.	.	.							450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure												.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.
Query Sequence	E	I	N	R	L	R	Y	N	W	Q	E	.	.	.	.	.	.	S	R	P	S	A	L	T	A	L	L	G	A	E	A	E	N	I	D	L	F	D	R	M	Q	L	E	H	V	I	A	I	C	R	Q	A	K	S	L	S	A	A	G	R	Q	L	F	D	V	S	R	Q	G	K	A	S	V	N	D	A	D	R	L	R
Query Conservation												.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.
Template Conservation
Template Sequence	A	V	N	D	A	A	H	F	T	P	F	H	W	V	D	A	L	L	M	G	K	S	K	R	A	L	H	I	L	Q	Q	L	R	L	E	G	S	E	P	V	I	L	L	R	T	L	Q	R	E	L	L	L	L	V	N	L	K	R	Q	S	A	H	T	P	L	R	A	L	F	D	K	H	R	V	W	Q	N	R	R	G
Template Known Secondary structure																		T	T	S										T	S	S	T	T	T	T																						T		S	S	S	S										T			S	S
Template Predicted Secondary structure
Template SS confidence
	205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

	513	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	Y	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	M	M	G	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	285	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions