Job Description P38035 Confidence 98.87% Date Thu Jan 5 11:57:48 GMT 2012 Rank 80 Aligned Residues 197 % Identity 14% Template c1sxjC_ PDB info PDB header:replication Chain: C: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	R	N	P	H	F	N	R	M	I	E	Q	I	E	K	V	A	I	K	S	R	A	P	I	L	L	N	G	P	T	G	A	G	K	S	F	L	A	R	R	I	L	E	L	K	Q	A	R	H	Q	F	S	G	A	F	V	E	V	N	C	A	T	L	R	G	D	T	A	M	S	T	L	F	G	H	V	K	G	A
Query Conservation
Alig confidence																								.	.																										.																										.	.	.	.	.
Template Conservation																								.	.																										.																										.	.	.	.	.
Template Sequence		V	Y	G	Q	N	E	V	I	T	T	V	R	K	F	V	D	E	G	K	L	P	H	.	.	L	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	V	A	L	A	R	E	I	Y	G	K	.	N	Y	S	N	M	V	L	E	L	N	A	S	D	D	R	G	I	D	V	V	R	N	Q	I	K	.	.	.	.	.
Template Known Secondary structure				S														T	T					.	.						S	S	S	S	S														T	T	.	S										T	T	S			S						T				.	.	.	.	.
Template Predicted Secondary structure																								.	.																										.																										.	.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.			.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	T	G	A	R	E	S	R	E	G	L	L	R	S	A	N	G	G	M	L	F	L	D	E	I	G	E	L	G	A	D	E	Q	A	M	L	L	K	A	I	E	E	K	T	F	Y	P	F	G	S	D	R	Q	V	S	S	D	F	Q	L	I	A	G	T	V	R	D	L	R	Q	L	V	A	E	G	K	F	R	E	D
Query Conservation
Alig confidence		.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Sequence		.	.	.	.	D	F	A	S	T	R	Q	I	F	S	K	G	F	K	L	I	I	L	D	E	A	D	A	M	T	N	A	A	Q	N	A	L	R	R	V	I	E	R	Y	T	.	.	.	.	.	.	.	.	.	.	.	K	N	T	R	F	C	V	L	A	N	Y	.	.	.	.	.	.	.	A	H	K	L	T	P	A
Template Known Secondary structure		.	.	.	.					S			S	S	S		S							T	T	G	G	G	S															T	T	.	.	.	.	.	.	.	.	.	.	.	T	T								S		.	.	.	.	.	.	.	G	G	G	S
Template Predicted Secondary structure		.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template SS confidence
						99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.												.	140	.	.	.	.	.	.	.	.	.								150	.	.	.	.	.	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	A	R	I	N	L	W	T	F	T	L	P	G	L	R	Q	R	Q	E	D	I	E	P	N	L	D	Y	E	V	E	R	H	A	S	L	T	G	D	S	V	R	F	N	T	E	A	R	R	A	W	L	A	F	A	T	S	P	Q	A	T	W	R	G	N	F	R	E	L	S	A	S	V	T	R	M	A	T	F	A
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.															.	.														.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.															.	.														.	.	.	.	.	.	.
Template Sequence		L	L	S	Q	C	T	R	F	R	F	Q	P	L	P	Q	E	A	.	.	.	.	.	.	.	.	I	E	R	R	I	A	N	V	L	V	H	E	K	L	.	.	K	L	S	P	N	A	E	K	A	L	I	E	L	.	.	.	.	.	.	.	S	N	G	D	M	R	R	V	L	N	V	L	Q	S	C	K	A	T	L
Template Known Secondary structure				T	T	S													.	.	.	.	.	.	.	.											T	T	T		.	.		B												.	.	.	.	.	.	.		T	T									T	T	T	T	T	T	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.															.	.														.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.									.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200								.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		427	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	G	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	N	P	D
Template Known Secondary structure			S	S	S
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions