Job Description P38035 Confidence 98.88% Date Thu Jan 5 11:57:48 GMT 2012 Rank 78 Aligned Residues 198 % Identity 18% Template c1sxjB_ PDB info PDB header:replication Chain: B: PDB Molecule:activator 1 37 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	L	K	S	G	I	A	T	R	N	P	H	F	N	R	M	I	E	Q	I	E	K	V	A	I	K	S	R	A	P	I	L	L	N	G	P	T	G	A	G	K	S	F	L	A	R	R	I	L	E	L	K	Q	A	R	H	Q	F	S	G	A	F	V	E	V	N	C	A	T	L	R	G	D	T	A	M	S	T	L
Query Conservation
Alig confidence																									.	.	.																															.
Template Conservation																									.	.	.																															.
Template Sequence		P	Q	V	L	S	D	I	V	G	N	K	E	T	I	D	R	L	Q	Q	I	A	K	D	.	.	.	G	N	M	P	H	M	I	I	S	G	M	P	G	I	G	K	T	T	S	V	H	C	L	A	H	E	L	L	G	R	.	S	Y	A	D	G	V	L	E	L	N	A	S	D	D	R	G	I	D	V	V	R	N	Q
Template Known Secondary structure			S	S	G	G	G			S		T												S	.	.	.											S	T	T	S	S														G	G	.	G										T	T	S			S						T
Template Predicted Secondary structure																									.	.	.																															.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	G	H	V	K	G	A	F	T	G	A	R	E	S	R	E	G	L	L	R	S	A	N	G	G	M	L	F	L	D	E	I	G	E	L	G	A	D	E	Q	A	M	L	L	K	A	I	E	E	K	T	F	Y	P	F	G	S	D	R	Q	V	S	S	D	F	Q	L	I	A	G	T	V	R	D	L	R	Q	L	V	A
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template Sequence		I	K	H	F	A	Q	K	K	L	H	L	P	P	G	.	.	.	.	.	.	.	.	K	H	K	I	V	I	L	D	E	A	D	S	M	T	A	G	A	Q	Q	A	L	R	R	T	M	E	L	Y	S	.	.	.	.	.	.	.	.	.	.	.	N	S	T	R	F	A	F	A	C	N	Q	.	.	.	.	.	.	.
Template Known Secondary structure														T	T	.	.	.	.	.	.	.	.									S	G	G	G	S							T	T							T	T	.	.	.	.	.	.	.	.	.	.	.	T	T								S		.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.									.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.												.	.	.	.	140	.	.	.	.	.	.
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	K	F	R	E	D	L	Y	A	R	I	N	L	W	T	F	T	L	P	G	L	R	Q	R	Q	E	D	I	E	P	N	L	D	Y	E	V	E	R	H	A	S	L	T	G	D	S	V	R	F	N	T	E	A	R	R	A	W	L	A	F	A	T	S	P	Q	A	T	W	R	G	N	F	R	E	L	S	A	S	V
Query Conservation
Alig confidence																							.	.	.	.																.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.																.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Sequence		S	N	K	I	I	E	P	L	Q	S	Q	C	A	I	L	R	Y	S	K	L	S	.	.	.	.	D	E	D	V	L	K	R	L	L	Q	I	I	K	L	E	.	.	.	.	.	.	D	V	K	Y	T	N	D	G	L	E	A	I	I	F	T	A	.	.	.	.	.	.	.	E	G	D	M	R	Q	A	I	N	N	L
Template Known Secondary structure		G	G	G	S						T	T	S										.	.	.	.																.	.	.	.	.	.	T			B													.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																							.	.	.	.																.	.	.	.	.	.																	.	.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.					.	.	170	.	.	.	.	.	.	.	.	.	180	.	.							.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.								.	200	.	.	.	.	.	.	.	.	.
		420	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	M	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	S	T	V	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions