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Job DescriptionP38035
Confidence98.67%DateThu Jan 5 11:57:48 GMT 2012
Rank92Aligned Residues149
% Identity21%Templatec1s3sA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   187..190.........200... ......210.........220.........230.........240.........250.....
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Query Sequence  ATRNPHFNRMIEQIEKV. . . . . . . . . . . AIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA
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Template Sequence  VGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF. . . . . . FFLINGP. . . . . . .
Template Known Secondary structure 

S

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   206...210.........220.........230.........240.........250.........260..... ....270..
 
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Query Sequence  MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGEL. . . . . . . . . . . GADEQAMLLKAIEEKTFYPFGSDRQVSSDF
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Template Sequence  . . EIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK. . . . . . . . . QRAHV
Template Known Secondary structure  ..TS
TTT
STGGGT


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   273......280.........290.........300.........310.........320.........330...... ...340.
 
   325....330.........340........ .350.. .......360......
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Query Sequence  QLIAGTVRDLRQLVAEGKFREDLY. . ARIN. LWTFTLPGLRQRQE
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Template Sequence  IVMAATNR. . . . . . . PNSIDPALRRFGRFDREVDIGIPDATGRLE
Template Known Secondary structure  S
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GGGTSTTSS





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   342....... 350.........360.........370.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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