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Job DescriptionP38035
Confidence99.90%DateThu Jan 5 11:57:48 GMT 2012
Rank10Aligned Residues362
% Identity14%Templatec1r6bX_
PDB info PDB header:hydrolaseChain: X: PDB Molecule:clpa protein; PDBTitle: high resolution crystal structure of clpa
Resolution2.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  KTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNP
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Template Sequence  KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   315....320.........330.........340.........
 
   83......90......... 100.........110.........120.........130.........140.........150.... .
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Query Sequence  WDFEEVYACLHDFARGY. . . . . . EFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEV. T
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Template Sequence  . SIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIES
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   350.........360.........370.........380.........390.........400.........410.........420........
 
   156...160.........170.........180.........190.........200..... ....210.........220........
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Query Sequence  IIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAI. . . . . . . KSRAPILLNGPTGAGKSFLARRI
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Template Sequence  VVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL
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SSSSTTTS
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   429430.........440.........450.........460.........470.........480.........490.........500........
 
   229230.........240.........250.........260.........270.... .....280.........290.........300.......
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Query Sequence  LELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESR. EGLLRSANGGMLFLDEIGELGADEQAMLLKAIE
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Template Sequence  SKAL. . . . . . GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMD
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   509510.. .......520.........530.........540.........550.........560.........570.........580..
 
   308.310.........320.........330......... 340.........350.........360.........370.........380......
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Query Sequence  EKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVA. EGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS
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Template Sequence  NGTLTDNNGRKADFRNVVLVMTTNAGVRAMEEIKKIFTPEFRNRLDNI. IWFDHLST. . DVIHQVVDKFIVELQVQLDQK
Template Known Secondary structure  STTT
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   583......590.........600.........610.........620.........630 ........ .640.........650.........
 
   387..390.........400.........410.........420...
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Query Sequence  . . . VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA
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Template Sequence  GVSLEVSQEARNWLAE. . . . KGYDRAMGARPMARVIQDNL
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   677..680.........690.. .......700.........710..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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