Job Description P38035 Confidence 99.91% Date Thu Jan 5 11:57:48 GMT 2012 Rank 8 Aligned Residues 390 % Identity 15% Template c1qvrB_ PDB info PDB header:chaperone Chain: B: PDB Molecule:clpb protein; PDBTitle: crystal structure analysis of clpb Resolution 3.00 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																.																			.	.	.
Query SS confidence																.																			.	.	.
Query Sequence		T	V	L	D	Y	A	G	R	G	S	Q	R	W	S	.	K	W	R	P	T	L	C	L	C	Q	Q	E	S	L	V	I	D	R	.	.	.	L	E	L	L	H	D	A	R	S	R	S	L	F	E	T	L	K	R	D	I	A	S	V	S	P	E	T	E	V	V	S	V	E	I	E	L	H	N	P	W	D	F	E	E
Query Conservation																.																			.	.	.
Alig confidence																.																			.	.	.
Template Conservation
Template Sequence		R	I	S	D	S	A	I	I	A	A	A	T	L	S	H	R	Y	I	T	E	R	R	L	P	D	K	A	I	D	L	I	D	E	A	A	A	R	L	R	M	A	L	E	S	A	P	E	E	I	D	A	L	E	R	K	K	L	Q	L	E	I	E	R	E	A	L	K	K	E	K	D	P	D	S	Q	E	R	L	K	A
Template Known Secondary structure																					S	S																						T	S																							T	S	S			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.																											.	.	140	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Y	A	C	L	H	D	F	A	R	G	Y	E	F	Q	P	E	K	E	D	Y	L	I	H	I	T	T	G	T	H	V	A	Q	I	C	W	F	L	L	A	E	A	R	Y	L	P	A	R	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	S	P
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	E	A	E	I	A	K	L	T	E	E	I	A	K	L	R	A	E	W	E	R	E	R	E	I	L	R	K	L	R	E	A	Q	H	R	L	D	E	V	R	R	E	I	E	L	A	E	R	Q	Y	D	L	N	R	A	A	E	L	R	Y	G	E	L	P	K	L	E	A	E	V	E	A	L	S	E	K	L	R	G	A
Template Known Secondary structure							G	G	G	G	G																																								T										T	T															T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.								.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.
Query Sequence		P	R	K	K	E	Q	P	R	G	P	G	E	V	T	I	I	D	L	D	L	S	R	Y	N	A	I	A	S	R	F	A	E	E	R	Q	Q	T	L	D	F	L	K	S	G	I	A	T	R	N	P	H	F	N	R	M	I	E	Q	I	E	K	V	A	.	.	.	.	.	.	.	I	K	S	R	A	P	I	L	L	N
Query Conservation																																																																	.	.	.	.	.	.	.
Alig confidence																																																																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	F	V	R	L	E	V	T	E	E	D	I	A	E	I	V	S	R	W	T	G	I	P	V	S	K	L	L	E	G	E	R	E	K	L	L	R	L	E	E	E	L	H	K	R	V	V	G	Q	D	E	A	I	R	A	V	A	D	A	I	R	R	A	R	A	G	L	K	D	P	N	R	P	I	G	S	F	L	F	L
Template Known Secondary structure		T	T																T	T	S	S						T	T									S							T	T	S		S																G	G	G	T	S		S	S	S		S						B
Template Predicted Secondary structure
Template SS confidence
		515	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	T	G	A	G	K	S	F	L	A	R	R	I	L	E	L	K	Q	A	R	H	Q	F	S	G	A	F	V	E	V	N	C	A	T	L	R	G	D	T	A	M	S	T	L	F	G	H	V	K	G	A	F	T	G	A	R	E	S	R	E	G	L	L	R	S	A	N	G	G	M	L	F	L	D	E	I	G	E	L
Query Conservation
Alig confidence																										.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	P	T	G	V	G	K	T	E	L	A	K	T	L	A	A	T	L	F	D	T	E	E	A	.	.	.	M	I	R	I	D	M	T	E	Y	M	E	K	H	A	V	S	R	L	Q	L	T	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	R	R	P	Y	S	V	I	L	F	D	E	I	E	K	A
Template Known Secondary structure		S	S	S	S	S	S														S	S	G	G	G	.	.	.						T	T	T			S	S	G	G	G	G	G							.	.	.	.	.	.	.	.	.	.	.	.	.					S	S						S	S	G	G	G	S
Template Predicted Secondary structure																										.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		595	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.				.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.														.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.																				340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	D	E	Q	A	M	L	L	K	A	I	E	E	K	T	F	Y	P	F	G	S	D	R	Q	V	S	S	D	F	Q	L	I	A	G	T	V	R	D	L	R	Q	L	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	K	F	R	E	D	L	Y	A	R	I	N	L	W	T
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation																																																																																	.
Template Sequence		H	P	D	V	F	N	I	L	L	Q	I	L	D	D	G	R	L	T	D	S	H	G	R	T	V	D	F	R	N	T	V	I	I	L	T	S	N	L	G	S	P	L	I	L	E	G	L	Q	K	G	W	P	Y	E	R	I	R	D	E	V	F	K	V	L	Q	Q	H	F	R	P	E	F	L	N	R	L	D	E	I	.
Template Known Secondary structure														T	T	T					S	S	S						T	T									T	T										T	T															T	T	T	S							T		S	B		.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		673	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.				.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure																																	.	.	.
Query SS confidence																																	.	.	.
Query Sequence		F	T	L	P	G	L	R	Q	R	Q	E	D	I	E	P	N	L	D	Y	E	V	E	R	H	A	S	L	T	G	D	S	.	.	.	V	R	F	N	T	E	A	R	R	A	W	L	A	F	A	T	S	P	Q	A	T	W	R	G	N	F	R	E	L	S	A	S	V	T	R	M	A	T
Query Conservation																																	.	.	.
Alig confidence										.	.																						.	.	.														.	.	.	.
Template Conservation										.	.																																						.	.	.	.
Template Sequence		V	V	F	R	P	L	T	K	.	.	E	Q	I	R	Q	I	V	E	I	Q	L	S	Y	L	R	A	R	L	A	E	K	R	I	S	L	E	L	T	E	A	A	K	D	F	L	A	E	.	.	.	.	R	G	Y	D	P	V	F	G	A	R	P	L	R	R	V	I	Q	R	E	L	E
Template Known Secondary structure			B							.	.																				T	T	T																.	.	.	.				B	T	T	T	B	T	S										T
Template Predicted Secondary structure										.	.																																						.	.	.	.
Template SS confidence
		752	.	.	.	.	.	.	.			760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.					.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.