Job Description P38035 Confidence 99.70% Date Thu Jan 5 11:57:48 GMT 2012 Rank 21 Aligned Residues 204 % Identity 20% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

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		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.								.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.
Query Sequence		K	S	G	I	A	T	R	N	P	H	F	N	R	M	I	E	Q	I	E	K	V	.	.	.	.	.	.	.	A	I	K	S	R	A	P	I	L	L	N	G	P	T	G	A	G	K	S	F	L	A	R	R	I	L	E	L	K	Q	A	R	H	Q	F	S	G	A	F	V	E	V	N	C	A	T	L	R	G	D	T	A
Query Conservation																							.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.																														.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.
Template Sequence		M	N	G	I	I	K	W	G	D	P	V	T	R	V	L	D	D	G	E	L	L	V	Q	Q	T	K	N	S	D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	.	.	.	.	.	.	N	F	P	F	I	K	I	C	S	P	D	K	M	I	G	F	S
Template Known Secondary structure		T	T						S																					S	S		S									S	T	T	S	S													.	.	.	.	.	.			S							G	G	G	S	T	T
Template Predicted Secondary structure																																																											.	.	.	.	.	.
Template SS confidence
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560							.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.											.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	T	L	F	G	H	V	K	G	A	F	T	G	A	R	E	S	R	E	G	L	L	R	S	A	N	G	G	M	L	F	L	D	E	I	G	E	L	G	.	.	.	.	.	.	.	.	.	.	A	D	E	Q	A	M	L	L	K	A	I	E	E	K	T	F	Y	P	F	G	S	D	R	Q	V	S	S	D	F	Q
Query Conservation																																										.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.
Template Sequence		E	T	A	K	C	Q	A	M	K	K	I	F	D	D	A	Y	K	S	Q	L	S	.	.	.	.	.	.	.	.	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	N	L	V	L	Q	A	L	L	V	L	L	K	K	.	.	.	.	.	.	.	.	A	P	P	Q	G	R	K	L	L
Template Known Secondary structure																		T	S	S			.	.	.	.	.	.	.	.											T	T		B	T	T	T	T	B													T	T		.	.	.	.	.	.	.	.			S	T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.
Template SS confidence
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.									.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.									.	.	.	.	.	.	.	640	.
		326	.	.	.	330	.	.			.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		L	I	A	G	T	V	R	.	.	D	L	R	Q	L	V	A	E	G	K	F	R	E	D	L	Y	A	R	I	N	L	W	T	F	T	L	P	G	L	R	Q	R	Q	E	D	I	E	P	N	L	D	Y	E	V	E	R	H	A	S	L	T	G	D	S	V	R	F	N	T	E	A	R	R	A	W	L	A	F	A	T	S
Query Conservation									.	.
Alig confidence									.	.													.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation																							.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Sequence		I	I	G	T	T	S	R	K	D	V	L	Q	E	M	E	M	L	N	A	F	S	.	.	.	.	.	.	.	.	.	T	T	I	H	V	P	N	I	A	T	G	E	Q	L	L	E	A	L	E	L	L	G	.	.	.	.	.	.	.	.	.	.	.	.	N	F	K	D	K	E	R	T	T	I	A	Q	.	.	Q	V
Template Known Secondary structure							S								T	T	G	G	G	T	S	S	.	.	.	.	.	.	.	.	.																						T	.	.	.	.	.	.	.	.	.	.	.	.		S											.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template SS confidence
		642	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.										.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.													.	.	.	.	.	690	.	.	.	.	.	.			.	.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	A	T	W	R	G	N	F	R	E	L	S	A	S	V	T	R	M	A	T	F	A	T	S	G	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G	K	K	V	W	I	G	I	K	K	L	L	M	L	I	E	M	S	L	Q	M	D	P	E	Y	R	V
Template Known Secondary structure		T	T	S																	T	T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		699	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions