Job Description P38035 Confidence 98.60% Date Thu Jan 5 11:57:48 GMT 2012 Rank 95 Aligned Residues 178 % Identity 18% Template c1jr3E_ PDB info PDB header:transferase Chain: E: PDB Molecule:dna polymerase iii, delta' subunit; PDBTitle: crystal structure of the processivity clamp loader gamma2 complex of e. coli dna polymerase iii Resolution 2.70 Å

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		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210			.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.																			.	.	.	.	.	.
Predicted Secondary structure																						.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.
Query SS confidence																						.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.
Query Sequence		P	H	F	N	R	M	I	E	Q	I	E	K	V	A	I	K	S	R	A	P	.	.	I	L	L	N	G	P	T	G	A	G	K	S	F	L	A	R	R	I	L	E	L	K	Q	A	R	H	Q	F	S	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	V	E	V	N	C	.	.	.
Query Conservation																						.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.
Alig confidence																						.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.
Template Conservation
Template Sequence		P	W	L	R	P	D	F	E	K	L	V	A	S	Y	Q	A	G	R	G	H	H	A	L	L	I	Q	A	L	P	G	M	G	D	D	A	L	I	Y	A	L	S	R	Y	L	L	C	Q	Q	P	Q	G	H	K	S	C	G	H	C	R	G	C	Q	L	M	Q	A	G	T	H	P	D	Y	Y	T	L	A	P	E	K	G
Template Known Secondary structure		T	T										T	T	T	T	T	S				S								T	T	S	S													T		S	S			S	S	S			S		S								T	S			S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
			248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	A	T	L	R	G	D	T	A	M	S	T	L	F	G	H	V	K	G	A	F	T	G	A	R	E	S	R	E	G	L	L	R	S	A	N	G	G	M	L	F	L	D	E	I	G	E	L	G	A	D	E	Q	A	M	L	L	K	A	I	E	E	K	T	F	Y	P	F	G	S	D	R	Q	V	S	S	D	F	Q	L
Query Conservation		.
Alig confidence		.																										.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	N	T	L	G	V	D	A	V	R	E	V	T	E	K	L	N	E	H	A	R	L	G	G	A	K	.	.	.	.	.	.	.	.	.	.	.	.	V	V	W	V	T	D	A	A	L	L	T	D	A	A	A	N	A	L	L	K	T	L	E	E	P	.	.	.	.	.	.	.	.	.	.	.	P	A	E	T	W	F
Template Known Secondary structure		S	S	S	B													S	S			T	T	S	S			.	.	.	.	.	.	.	.	.	.	.	.					S		G	G	G	B														S		.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110													.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.												.	.	.	.	140	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	G	T	V	R	D	L	R	Q	L	V	A	E	G	K	F	R	E	D	L	Y	A	R	I	N	L	W	T	F	T	L	P	G	L	R	Q	R	Q	E	D	I	E	P	N	L	D	Y	E	V	E	R	H	A	S	L	T	G	D	S	V	R	F	N	T	E	A	R	R	A	W	L	A	F	A	T	S	P	Q	A
Query Conservation
Alig confidence								.	.	.	.	.	.	.													.	.											.	.										.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.													.	.											.	.										.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template Sequence		F	L	A	T	R	E	.	.	.	.	.	.	.	P	E	R	L	L	A	T	L	R	S	R	C	.	.	R	L	H	Y	L	A	P	P	P	E	.	.	Q	Y	A	V	T	W	L	S	R	.	.	.	.	.	.	.	.	.	.	.	E	V	T	M	S	Q	D	A	L	L	A	A	L	R	L	.	.	.	.	.	.
Template Known Secondary structure						S		.	.	.	.	.	.	.	S	T	T	S		T	T	T	T	T	T	S	.	.											.	.										.	.	.	.	.	.	.	.	.	.	.		S													T	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.	.	.	.	.													.	.											.	.										.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.
Template SS confidence
		142	.	.	.	.	.								.	.	150	.	.	.	.	.	.	.	.	.			160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.												.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		T	W	R	G	N	F	R	E	L	S	A	S	V	T
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	S	A	G	S	P	G	A	A	L	A	L	F	Q
Template Known Secondary structure		.	T	T	T										S
Template Predicted Secondary structure		.
Template SS confidence
			194	.	.	.	.	.	200	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions