Job Description P38035 Confidence 99.08% Date Thu Jan 5 11:57:48 GMT 2012 Rank 66 Aligned Residues 207 % Identity 18% Template c1iy2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent metalloprotease ftsh; PDBTitle: crystal structure of the ftsh atpase domain from thermus2 thermophilus Resolution 3.20 Å

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		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.											.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	R	N	P	H	F	N	R	M	I	E	Q	I	E	K	V	A	.	.	.	.	.	.	.	.	.	.	I	K	S	R	A	P	I	L	L	N	G	P	T	G	A	G	K	S	F	L	A	R	R	I	L	E	L	K	Q	A	R	H	Q	F	S	G	A	F	V	E	V	N	C	A	T	L	R	G	D	T	A	M
Query Conservation																				.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.											.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.											.	.	.	.	.	.	.	.
Template Sequence		V	A	G	A	E	E	A	K	E	E	L	K	E	I	V	E	F	L	K	N	P	S	R	F	H	E	M	G	A	R	I	P	K	G	V	L	L	V	G	P	P	G	V	G	K	T	H	L	A	R	A	V	A	G	E	A	.	.	.	.	.	.	R	V	P	F	I	T	A	S	G	S	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	S	S																								T	T													T	T	S	S												T	.	.	.	.	.	.	T										.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.											.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.							.	.	.	.	.	.	220	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.							.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																																								.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.
Query Sequence		S	T	L	F	G	H	V	K	G	A	F	T	G	A	R	E	S	R	E	G	L	L	R	S	A	N	G	G	M	L	F	L	D	E	I	G	E	L	.	.	.	.	.	.	G	A	D	E	Q	A	M	L	L	K	A	I	E	E	K	T	F	Y	P	F	G	S	D	R	Q	V	S	S	D	F	Q	L	I	A	G	T
Query Conservation																																								.	.	.	.	.	.
Alig confidence		.																																						.	.	.	.	.	.													.	.	.	.	.	.	.	.	.
Template Conservation		.																																																								.	.	.	.	.	.	.	.	.
Template Sequence		.	D	F	V	E	M	F	V	G	V	G	A	A	R	V	R	D	L	F	E	T	A	K	R	H	A	P	C	I	V	F	I	D	E	I	D	A	V	G	R	K	N	D	E	R	E	Q	T	L	N	Q	L	L	V	E	M	.	.	.	.	.	.	.	.	.	D	G	F	E	K	D	T	A	I	V	V	M	A	A	T
Template Known Secondary structure		.					S	T	T	T															T	S		S							T																							.	.	.	.	.	.	.	.	.	T	T			T	T
Template Predicted Secondary structure		.																																																								.	.	.	.	.	.	.	.	.
Template SS confidence
			224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.										.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		V	R	D	L	R	Q	L	V	A	E	G	K	F	R	E	D	L	Y	A	R	.	I	N	L	W	T	F	T	L	P	G	L	R	Q	R	Q	E	D	I	E	P	N	L	D	Y	E	V	E	R	H	A	S	L	T	G	D	S	V	R	F	N	T	E	A	R	R	A	W	L	A	F	A	T	S	P	Q	A	T	W	R
Query Conservation																						.
Alig confidence				.	.	.	.	.	.	.												.														.	.												.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.																										.	.												.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Sequence		N	R	.	.	.	.	.	.	.	P	D	I	L	D	P	A	L	L	R	P	G	R	F	D	R	Q	I	A	I	D	A	P	D	V	.	.	K	G	R	E	Q	I	L	R	I	H	A	.	.	.	.	R	G	K	P	L	A	E	D	V	D	L	A	L	L	A	K	R	.	.	.	.	.	.	.	.	.	.	T	P
Template Known Secondary structure		S		.	.	.	.	.	.	.	T	T	S	S						S	T	T	S	S												.	.												.	.	.	.	T	T	S		B		T	T									T	.	.	.	.	.	.	.	.	.	.		T
Template Predicted Secondary structure				.	.	.	.	.	.	.																										.	.												.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		302	.								.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.			.	330	.	.	.	.	.	.	.	.	.					340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.											.	.
		410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.				.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure			.																	.	.	.
Query SS confidence			.																	.	.	.
Query Sequence		G	.	N	F	R	E	L	S	A	S	V	T	R	M	A	T	F	A	.	.	.	T	S	G	R	I	T	L	D	V	V	E	D	E	I
Query Conservation			.																	.	.	.
Alig confidence			.																	.	.	.
Template Conservation
Template Sequence		G	F	V	G	A	D	L	E	N	L	L	N	E	A	A	L	L	A	A	R	E	G	R	R	K	I	T	M	K	D	L	E	E	A	A
Template Known Secondary structure		T																				T	T			S	B									T
Template Predicted Secondary structure
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions