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Job DescriptionP38035
Confidence99.58%DateThu Jan 5 11:57:48 GMT 2012
Rank33Aligned Residues266
% Identity18%Templatec1hqcB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:ruvb; PDBTitle: structure of ruvb from thermus thermophilus hb8
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   187..190.........200.........210 .........220.........230.........240.........250.........260...
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Query Sequence  ATRNPHFNRMIEQIEKVAIKSRAP. . . ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHV
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Template Sequence  YIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL. . . . . . GVNLRVTSGPAIEKPGDLAAIL. . .
Template Known Secondary structure  S
S
SS
S






TT

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TTT

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   14.....20.........30.........40.........50.........60.. .......70.........80....
 
   264.....270.........280.........290.........300.........310.........320.........330.........340...
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Query Sequence  KGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKF
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Template Sequence  . . . . . . . . . . . . . ANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLI
Template Known Secondary structure  .............TT

TT
TTTTS

S

BSSSSS
B





SS
SS
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   85....90.........100.........110.........120.........130.........140.........150.
 
   344.....350.........360.........370.........380.........390.........400.........410.........420...
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Query Sequence  REDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA
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Template Sequence  TAPLLSRFGIVEHLEYY. . . TPEELAQGVMRDARL. . . . . . LGVRITEEAALEIGRR. . . . . . . SRGTMRVAKRLFRRVR
Template Known Secondary structure  S
STTTT
S




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T......TS

B
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S
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   152.......160........ .170.........180... ......190......... 200.........210.....
 
   424.. ...430.........440.........450.........460.........470.........480.........490...... .
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Query Sequence  TFA. . . TSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFD. . . V
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Template Sequence  DFAQVAGEEVITRERALEALAALGLDELG. . . . . . . . . . . . . . . . . . . . . . . . . . . . LEKRDREILEVLILRFGGGPVGL
Template Known Secondary structure  TTSS
SSSS
B
T

TT
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S
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   216...220.........230.........240.... .....250.........260.......
 
   498.500.........510........
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Query Sequence  SRQGKASVNDADRLRKYLARF
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Template Conservation        
      
       
Template Sequence  ATLATALSEDPGTLEEVHEPY
Template Known Secondary structure  TTS
T
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   268.270.........280........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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