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Job DescriptionP09152
Confidence100.00%DateThu Jan 5 11:02:00 GMT 2012
Rank20Aligned Residues586
% Identity21%Templated2jioa2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution2.2

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   41........50.........60.........70.........80.........90.........100.........110.........120
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Query Sequence  QHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPMMRKRLMK
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Template Sequence  RPEKWVKGVC. RYCGTGCGVLVGVKDGKAVAIQGDPNNH. NAG. . . . . . . LLCLKGSLLIPVLNSKERVTQPLVR. . . . .
Template Known Secondary structure 

S
.SS
TT

TT
TTST.TTT.......


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S
S

S

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   4.....10... ......20.........30.........40. ... .....50.........60.........
 
   121........130.........140.........150.........160.........170.........180.........190.........200
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Query Sequence  MWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSY
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RHKGGKLEPVSWDEALDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESY
Template Known Secondary structure  ...............................SSTT





GGG
TTS
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   70.........80.........90.........100.........110........
 
   201........210.........220..... ....230.........240.........250.........260.........270.. ....
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Query Sequence  ASGARYLSLIGGTCLSFYDWYCDLP. . PASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVR. . YKGT
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Template Conservation            

         
      
     
         
   

 

  
 

             
     
 
Template Sequence  VANKIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGKDEPMGTYADIDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGV
Template Known Secondary structure  TT



GGGGTTSS
S
SS
GGGGGT
SS

S
TT
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   119120.........130.........140.........150.........160.........170.........180.........190........
 
   277..280.........290.........300.........310.........320.........330.........340.........350......
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Query Sequence  KTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRML
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Template Sequence  KIIVADPRRTNTSRIADMHVAFRPGTDLAFMHSMAWVIINEELDNP. . . . . . RFWQRYVNFMDAEGKPSD. . . . . . . . . .
Template Known Secondary structure 
SS

GGGGG
S


TT
TT
S
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TTS

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   199200.........210.........220.........230.........240.... .....250.........260..
 
   357..360.........370.........380.........390.........400.........410.........420.........430......
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Query Sequence  RAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKWNLEQRDGKTGEETELQLSLLGSQDEIAEVGFPYFG
Query Conservation 
  
            
  
  
  
    
                                                 
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
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   437..440.........450.........460.........470.........480.........490.........500.........510......
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Query Sequence  GDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVKAYTPAWAEQITGVSR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FEGYKAF. . . . . . . . . . . . . . . . . . LENYRPEKVAEICRVPV
Template Known Secondary structure  ........................................................GGG
TS
Template Predicted Secondary structure  ........................................................





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   263...... 270.........280......
 
   517..520.........530.........540.........550.........560.........570.........580.........590......
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Query Sequence  SQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFA
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Template Sequence  EQIYGAARAFAES. . . . . AATMSLWCMGINQRVQGVFANNLIHNLHLITGQICRPGATSFSLTGQP. . . . . . . . NACGGV
Template Known Secondary structure  S.....SS
SSTTT

SBTTB


SS........ST
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   287..290......... 300.........310.........320.........330.........340....... ..350...
 
   597..600.........610.........620.........630.........640.........650.........660.........670......
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Query Sequence  LDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAEKA
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Template Conservation                                  ................................................
Template Sequence  RDGGALSHLLPAGRAIPNAKHRAEMEKLWGLP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTTT
STTTTTTT
T

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   354.....360.........370.........380.....
 
   677..680.........690.........700.........710.........720.........730.........740.........750......
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Query Sequence  GMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQGKDLGQQGGVKPEEVD
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Template Sequence  . . . . . . . EGRIAPEPGYHTVALFEALGRGDVKCMIICETNPAHTLPNLN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  .......TT
S
SS



TSS
S

SSS...............................
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   386...390.........400.........410.........420.......
 
   757..760....... ..770....... ..780.........790.........800.........810.........820.........830....
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Query Sequence  WQDNGLEGKLD. LVVTLDFRLS. STCLYSDIILPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKF
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Template Sequence  . KVHKAMSHPESFIVCIEAFPDAVTLEYADLVLPPAFWCERDG. VYGCGERRYSLTEKAVDPPGQCRPTVNTLVEFARRA
Template Known Secondary structure  .TT
TT

S
TT
GGGGT
S
B

GGGS
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TTS


S


TT
B
T
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   428.430.........440.........450.........460......... 470.........480.........490.........500.....
 
   835....840.........850.........860.........870.........880.........890.........900.........910....
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Query Sequence  SEVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERDYPATYERFTSIGPLMEKIGNGG
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Template Conservation 
            
                 
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Template Sequence  GVDPQLVNFRNAEDVWNEWRMVSKGTTYDFWGM. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T

GGGG

SSTTSTT

TT
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   506...510.........520.........530........
 
   915....920.........930.........940.........950.........960.........970.........980.........990....
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Query Sequence  KGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAWAALSEFTGRDHTHLALNKEDEK
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Template Sequence  . . . . . . . . . TRERLRKESGLIW. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  .........
SS
S..........................................................
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   539540.........550.
 
   995....1000.........1010.........1020.........1030.........1040.......
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Query Sequence  IRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQQLYQ
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Template Sequence  . . . . . . . . . PCPSEDHPGTSLRYVRGQDPCVPADHPDRFFFYGKPDGRAVIWM
Template Known Secondary structure  .........


STT



SSTTBTTT
TTS
TT
SSSB

TTSTTS

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   552.......560.........570.........580.........590.....
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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