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Job DescriptionP09152
Confidence100.00%DateThu Jan 5 11:02:00 GMT 2012
Rank2Aligned Residues1073
% Identity100%Templated1y5ia2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.90

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  SKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRT
Query Conservation                              
 

  

     
         

   
     



 
       
 
  
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Template Sequence  SKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRT
Template Known Secondary structure 
GGGTGGGTTTT



GGG

S


SSSS



TT


S


Template Predicted Secondary structure 


















































Template SS confidence 















































































   1........10.........20.........30.........40.........50.........60.........70.........80
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  RPDLPNHEPRGCPRGASYSWYLYSANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRS
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Template Conservation    
 
    
 
 

 
    

 







 
      
            
               
 

 
 
 

Template Sequence  RPDLPNHEPRGCPRGASYSWYLYSANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRS
Template Known Secondary structure 
TTS


TT


TGGGGGTSTTB

S
TT
SST
TTTTSS

Template Predicted Secondary structure 


























































Template SS confidence 















































































   81........90.........100.........110.........120.........130.........140.........150.........160
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  SWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQTDVPES
Query Conservation 






 

 

  
   


 

                  
     
                     
        
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Template Sequence  SWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQTDVPES
Template Known Secondary structure 
T
GGG


GGGST


TTTTT
S
TS
S




Template Predicted Secondary structure 




























Template SS confidence 















































































   161........170.........180.........190.........200.........210.........220.........230.........240
 
   242.......250.........260.........270.........280.........290.........300.........310.........320.
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Query Sequence  ADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLD
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Template Sequence  ADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLD
Template Known Secondary structure  TT
SS

SGGGGGGT

SS

TSS


TT
TTT
Template Predicted Secondary structure 
























Template SS confidence 















































































   241........250.........260.........270.........280.........290.........300.........310.........320
 
   322.......330.........340.........350.........360.........370.........380.........390.........400.
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Query Sequence  NPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKW
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Template Conservation 
      


  


 



  
        
  

 

               

 
  
    
 
  
        
Template Sequence  NPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKW
Template Known Secondary structure  S

BSTTB
SSS
BGGGBTTGGG

SSGGG
B
BTTS

BTTSGGGTSSS
S

Template Predicted Secondary structure 




































































Template SS confidence 















































































   321........330.........340.........350.........360.........370.........380.........390.........400
 
   402.......410.........420.........430.........440.........450.........460.........470.........480.
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Query Sequence  NLEQRDGKTGEETELQLSLLGSQDEIAEVGFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLAN
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Template Sequence  NLEQRDGKTGEETELQLSLLGSQDEIAEVGFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLAN
Template Known Secondary structure  S
SSBBTTT

B

B



TTS
S

TT


TTS





SBTTS
Template Predicted Secondary structure 





































































Template SS confidence 















































































   401........410.........420.........430.........440.........450.........460.........470.........480
 
   482.......490.........500.........510.........520.........530.........540.........550.........560.
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Query Sequence  YGLERGLNDVNCATSYDDVKAYTPAWAEQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINM
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Template Sequence  YGLERGLNDVNCATSYDDVKAYTPAWAEQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINM
Template Known Secondary structure  TTB

SS

TTSBSSTTS

TT



TS

TSTT
Template Predicted Secondary structure 





























Template SS confidence 















































































   481........490.........500.........510.........520.........530.........540.........550.........560
 
   562.......570.........580.........590.........600.........610.........620.........630.........640.
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Query Sequence  LIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTG
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Template Sequence  LIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTG
Template Known Secondary structure  TT
TTSTT

SS



SSTTTT
S


TTGGGG



SGGGS
TTS
GGGS
S
Template Predicted Secondary structure 







































































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   561........570.........580.........590.........600.........610.........620.........630.........640
 
   642.......650.........660.........670.........680.........690.........700.........710.........720.
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Query Sequence  HLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSS
Query Conservation              

 
  
                                              

   
   


 
 
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Template Conservation              

 
  
                                               
  

   
 
 
 
Template Sequence  HLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSS
Template Known Secondary structure 
TTSS

SS
BSS
TTSTTS
TSS
BGGG
TTSSSSS

S

TTTTT
Template Predicted Secondary structure 










































































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   641........650.........660.........670.........680.........690.........700.........710.........720
 
   722.......730.........740.........750.........760.........770.........780.........790.........800.
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Query Sequence  GKGHEFMLKYLLGTEHGIQGKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMNTS
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Template Sequence  GKGHEFMLKYLLGTEHGIQGKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMNTS
Template Known Secondary structure 
SSTT
S




S

TTTTT



SSS


SS





SSB

T
SB

TTSS


Template Predicted Secondary structure 










































Template SS confidence 















































































   721........730.........740.........750.........760.........770.........780.........790.........800
 
   802.......810.........820.........830.........840.........850.........860.........870.........880.
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Query Sequence  DMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGK
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Template Sequence  DMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGK
Template Known Secondary structure  SSSS

SS

STT
B
TTTT




TTSGGG


SSS


GGGTSS


BTT
Template Predicted Secondary structure 














































Template SS confidence 















































































   801........810.........820.........830.........840.........850.........860.........870.........880
 
   882.......890.........900.........910.........920.........930.........940.........950.........960.
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Query Sequence  TAPHIMVVERDYPATYERFTSIGPLMEKIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAP
Query Conservation            

          
           
       
                                     
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Template Conservation            

          
                       
                            
    
Template Sequence  TAPHIMVVERDYPATYERFTSIGPLMEKIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAP
Template Known Secondary structure  TB
GGGTB

TT
TT


B

SSTTTTSBB

S
T
Template Predicted Secondary structure 














































Template SS confidence 















































































   881........890.........900.........910.........920.........930.........940.........950.........960
 
   962.......970.........980.........990.........1000.........1010.........1020.........1030.........1040.
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Query Sequence  ETNGQVAVKAWAALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSG
Query Conservation     
              
                       
      
           
           
  
 

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Template Conservation                    
     
                        
           
           

 
 

Template Sequence  ETNGQVAVKAWAALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSG
Template Known Secondary structure  TTBSS

GGGTGGGTT
B

S




TTSSS


SSS


TT



SSTTS
Template Predicted Secondary structure 
























































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   961........970.........980.........990.........1000.........1010.........1020.........1030.........1040
 
   1042.......1050.........1060.........1070....
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Query Sequence  RQQLYQDHQWMRDFGESLLVYRPPIDTRSVKEV
Query Conservation 


 
         
  

   
          
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Template Conservation 
  

 

      

 
               
Template Sequence  RQQLYQDHQWMRDFGESLLVYRPPIDTRSVKEV
Template Known Secondary structure  SB




STT
SS










STTT
Template Predicted Secondary structure 
















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   1041........1050.........1060.........1070...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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