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Job DescriptionP09152
Confidence100.00%DateThu Jan 5 11:02:00 GMT 2012
Rank19Aligned Residues660
% Identity23%Templated1vlfm2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution2.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70.........80.... .....90.........100.........110.
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Query Sequence  KIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPD. . . . . . . . . . . . LPNHEPRGCPRGASYSWYLYSANRLKY
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Template Sequence  EVVRLT. . . NSSTGGPVFVYVKDGKIIRMTPM. DFDDAVDAPSWKIEARGKTFTPPRKTSIAPYTAGFKSMIYSDLRIPY
Template Known Secondary structure 

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TT

TT

.B

TTTS




TT


SB



TTT
TTB

S
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   3..... .10.........20.........30. ........40.........50.........60.........70........
 
   112.......120.........130.........140.........150....... ..160.........170...
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Query Sequence  PMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGG. . . . . . . . . . . . . . . . . . FVRSSWQEVNELIAAS
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Template Sequence  PMKR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KSFDPNGERNPQLRGAGLSKQDPWSDYERISWDEATDIVVAE
Template Known Secondary structure 
..................................TT

TTS


GGGTTTT
GGGG

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   7980.. .......90.........100.........110.........120....
 
   174.....180.........190....... ..200.........210.........220...... ...230.........240...
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Query Sequence  NVYTIKNYGPDRVAGFSPIPAMSM. . . VSYASGARYLSLIGGTCLSFYDWYCDLPP. . . . . . . ASPQTWGEQTDVPESAD
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Template Sequence  INRIKHAYGPSAILSTPSSHHMWGNVGYRHSTYFRFMNMMGFTYADHNPDSWEGWHWGGMHMWGFSWRLGNPEQYDLLED
Template Known Secondary structure  T
GGG

S


S
TTTSTTT




TTTT

GGGTT



TT
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   125....130.........140.........150.........160.........170.........180.........190.........200....
 
   244.....250.........260... ......270.........280.........290. ........300.........310......
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Query Sequence  . WYNSSYIIAWGSNVPQTRTP. . . . . DAHFFTEVRYKGTKTVAVTPDYAEIAKL. CDLWLAPKQGTDAAMALAMGHVMLR
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Template Sequence  GLKHAEMIVFWSSDPETNSGIYAGFESNIRRQWLKDLGVDFVFIDPHMNHTARLVADKWFSPKIGTDHALSFAIAYTWLK
Template Known Secondary structure 
SS


SSS
TTTTTT

SS


S


TT
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   205....210.........220.........230.........240.........250.........260.........270.........280....
 
   317..320.........330.........340.........350.........360.........370.........380.........390......
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Query Sequence  EFHLDNPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWG
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Template Sequence  EDSYDK. . . . . . EYVAANAHG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T
S
......S...........................................................
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   285....290 .........
 
   397..400.........410.........420.........430.........440.........450.........460.........470......
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Query Sequence  EKGKWNLEQRDGKTGEETELQLSLLGSQDEIAEVGFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYD
Query Conservation                                                                  
   

  
 
 



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Template Conservation  ..............................................................................  
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FE
Template Known Secondary structure  ..............................................................................
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   300.
 
   477..480.........490.........500.........510.........520.........530.........540... ......550..
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Query Sequence  LTLANYGLERGLNDVNCATSYDDVKAYTPAWAEQITGVSRSQIIRIAREFADNADKTHGRSMIIVGA. . . . GLNHWYHLD
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Template Sequence  EWAD. . . . . . . . . . . . YVLGKTDGTPKTCEWAEEESGVPACEIRALARQWAKK. . . . . NTYLAAGGLGGWGGACRASHGI
Template Known Secondary structure  ............TTTTTS






S.....
TTTTS

GGGSSTT
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   302... ....310.........320.........330.........340.. .......350.........360....
 
   553......560.........570.........580.........590.........600.........610.........620.........630..
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Query Sequence  MNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSP
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Template Sequence  EWARGMIALATMQG. MGKPGSNMWSTTQGVPLDYEFYFPGYAEGGISGDCENSAAGFKFAWRMFDGKTTFPSPSNLNTSA
Template Known Secondary structure  TT.TTSTT


SSS




TTS



GGG
TTS

TTTSGGGTT

SSS





SSSSTT
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   365....370........ .380.........390.........400.........410.........420.........430.........440...
 
   633......640.........650.........660.........670.........680.........690.........700.........710..
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Query Sequence  MADKSRYTGHLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFI
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Template Sequence  GQHI. . . . . . . . . . . . . . . . . . . . . . . . . . . . PRLKIPECIMGGKFQWSGKGFAGGDISHQLHQYEYPAPGYSKIKMFWK
Template Known Secondary structure  S
............................GGGS


SS

SSTTGGG
S
TT




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   444... ..450.........460.........470.........480.........490.....
 
   713......720.........730.........740.........750.........760... ......770.........780.........790
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Query Sequence  WRSNLLGSSGKGHEFMLKYLLGTEHGIQGKDLGQQGGVKPEEVDWQDNGLE. . GKLDLVVTLDFRLSSTCLYSDIILPTA
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Template Sequence  YGGPHLGTMTATN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RYAKMYTHDSLEFVVSQSIWFEGEVPFADIILPAC
Template Known Secondary structure  S

SSST................................TT
TT

SBS
TTGGG
SB
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   496...500........ .510.........520.........530.........540...
 
   791....... .800.........810.........820.........830.........840.........850.......
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Query Sequence  TWYEKDDM. . . . . . . . . . . . . NTSDMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEVCVGHLGKETDIVTLPIQHDS
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Template Sequence  TNFERWDISEFANCSGYIPDNYQLCNHRVISLQAKCIEPVGESMSDYEIYRLFAKKLNIEEMFSEGKDELAWCEQYFNAT
Template Known Secondary structure 
GGGS
TT

BTTBTTGGGGSSS



S

STT
B
TT
TT

TS
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   544.....550.........560.........570.........580.........590.........600.........610.........620...
 
   858.860.........870.........880.........890.........900.........910.........920.........930.......
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Query Sequence  AAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERDYPATYERFTSIGPLMEKIGNGGKGIAWNTQSEMDLLRKLNYTKAE
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Template Sequence  DMPKYMTWDEFF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  SGGGT

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   624.....630.....
 
   938.940.........950.........960.........970.........980.........990.........1000.........1010.......
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Query Sequence  GPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAWAALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLE
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KKGYFVVPDNPNRKKTVALRWFAEGRE
Template Known Secondary structure  .....................................................




TTS



TTTTS
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   636...640.........650.........660..
 
   1018.1020.........1030.........1040.........1050.........1060.........1070.........1080.........
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Query Sequence  DEHVSYNAGYTNVHELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKEVIGQKSNGNQEKALNF
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Template Sequence  KDTPDWGPRLNNQVCRKGLQTTTGKVEFIATSLKNFEEQGYIDEHRPSMHTYVPAWES. . . . . . QKHSPLAV
Template Known Secondary structure 

SS
S
S
GGGSBTTBS
SSTTSSSB
TT


TTS
SB





TTS......TTT
GGG
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   663......670.........680.........690.........700.........710.........720 ........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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