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Job DescriptionP09152
Confidence100.00%DateThu Jan 5 11:02:00 GMT 2012
Rank22Aligned Residues585
% Identity23%Templated1tmoa2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution2.50

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   52.......60.........70.........80.........90.........100.........110.........120.........130.
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Query Sequence  VNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPMMRKRLMKMWREAKALHSD
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Template Sequence  TTGSHFGAFKMKRKNGVIAEVKPFDLDKYP. . . . . . . . . . . TDMINGIRGMVYNPSRVRYPMVR. . . . . . . . . . . . . . . .
Template Known Secondary structure  TTTT
TT
SS
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GGGGTS
TTB

S
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   11........20.........30.........40 .........50.........60...
 
   132.......140.........150. ........160.........170.........180.........190.......
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Query Sequence  PVEAWASIIEDADKAKSFKQ. . . . . . . . . . . ARGRGGFVRSSWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSM. . .
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Template Sequence  . . . . . . . . . . . . . . . . . . LDFLLKGHKSNTHQRGDFRFVRVTWDKALTLFKHSLDEVQTQYGPSGLHAGQTGWRATGQLH
Template Known Secondary structure  ..................GGGS
GGGTTS



T
GGG







S
TTT
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   64.....70.........80.........90.........100.........110.........120.....
 
   198.200.........210......... 220.........230... ......240.........250.........260.....
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Query Sequence  VSYASGARYLSLIGGTCLSFYD. WYCDLPPASPQTWG. . . . EQTDVPESADWYNSSYIIAWGSNVPQTRTPDA. . . . . . .
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Template Sequence  SSTSHMQRAVGMHGNYVKKIGDYSTGAGQTILPYVLGSTEVYAQGTSWPLILEHSDTIVLWSNDPYKNLQVGWNAETHES
Template Known Secondary structure 
TT


B

SSSTTTSS

TTS




SS

TS

SSB


T
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   126...130.........140.........150.........160.........170.........180.........190.........200.....
 
   266...270.........280.........290. ........300.........310.........320.........330.........
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Query Sequence  . . . . . HFFTEVRYKGTKTVAVTPDYAEIAKL. CDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRYTDMPM
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Template Sequence  FAYLAQLKEKVKQGKIRVISIDPVVTKTQAYLGCEQLYVNPQTDVTLMLAIAHEMISKKLYDD. . . . . . KFIQGYSLG. .
Template Known Secondary structure  TSS
SS

T



TT
TT
S
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   206...210.........220.........230.........240.........250.........260........ .270.......
 
   340.........350.........360.........370.........380.........390.........400.........410.........
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Query Sequence  LVMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKWNLEQRDGKTGEETELQLS
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Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   420.........430.........440.........450.........460.........470.........480.........490.........
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Query Sequence  LLGSQDEIAEVGFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDD
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Template Conservation  ....................................................... 
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FEEFVP. . . . . . . . . . . . YVMGTKD
Template Known Secondary structure  ...................................................................TTTT
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   278.280... ......290
 
   500.........510.........520.........530.........540.........550.........560.........570.........
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Query Sequence  VKAYTPAWAEQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWAHYV
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Template Sequence  GVAKTPEWAAPICGVEAHVIRDLAKTLVKG. . . . . . RTQFMMGWCIQRQQHGEQPYWMAAVLATMIGQIGLPGGGISYGH
Template Known Secondary structure  S



T

S......

SGGGSSTTTT
TTSTT
S
T
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   291........300.........310.........320 .........330.........340.........350.........360....
 
   580.........590.........600.........610.........620.........630.........640.........650.........
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Query Sequence  GQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSA
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Template Conservation                              ....................................................
Template Sequence  HYSSIGVPSSGAAAPGAFPRNLDENQKP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TSTTTTS











SS

TT


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   365....370.........380.........390..
 
   660.........670.........680.........690.........700.........710.........720.........730.........
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Query Sequence  PQLGTNPLTIAGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGI
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Template Sequence  . . . . . . LFDSSDFKGASSTIPVARWIDAILEPGKTIDANGSKVVYPDIKMMIFSGNNPWNHHQDRN. . . . . . . . . . . . . .
Template Known Secondary structure  ......SS




TTS
SGGGSTT

SSS




S

SS
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   393......400.........410.........420.........430.........440.........450..
 
   740.........750.........760.........770.........780.........790.........800. ........810.......
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Query Sequence  QGKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMNTS. . DMHPFIHPLSAAVDPA
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Template Sequence  . . . . . . . . . . . . . . . . . . RMKQAFHKLECVVTVDVNWTATCRFSDIVLPACTTYERNDIDVYGAYANRGILAMQKMVEPL
Template Known Secondary structure  ..................TT
SSB

T
SB

GGGS

TTT




S


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   453......460.........470.........480.........490.........500.........510....
 
   818.820.........830.........840.........850.........860.........870.........880.........890.......
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Query Sequence  WEAKSDWEIYKAIAKKFSEVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERDYPATY
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Template Sequence  FDSLSDFEIFTRFAAVLGKEKEYTRNMGEMEWLETLYNECKAANAGKFEMPDFATFWKQGYVHFGDGEVWTRHADFRND.
Template Known Secondary structure  TT
B
TT
TT

TTT













TT
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   515....520.........530.........540.........550.........560.........570.........580.........590...
 
   898.900.........910.........920.........930.........940.........950.........960.........970.......
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Query Sequence  ERFTSIGPLMEKIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAWAALSE
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   978.980.........990.........1000.........1010.........1020.........1030.........1040.........1050......
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Query Sequence  FTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQQLYQDHQWMRDFG.
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PEINPLGTPSGLIEIFSRKIDQFGYDD
Template Known Secondary structure  .....................................................TTTS

SSSSSSSS
TT

TT
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   594.....600.........610.........620
 
   1057..1060......
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Query Sequence  . ESLLVYRPPI
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Template Sequence  CKGHPTWMEKT
Template Known Secondary structure  S
SS






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   621........630.
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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