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Job DescriptionP09152
Confidence100.00%DateThu Jan 5 11:02:00 GMT 2012
Rank16Aligned Residues758
% Identity20%Templated1h0ha2
SCOP infoFormate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3 Formate dehydrogenase/DMSO reductase, domains 1-3
Resolution1.8

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.... .....70.........80.........90.........100.........110.........120.
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Query Sequence  KIVRSTHGVNCTGSCSWKIYV. . KNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPMMRKRLMKM
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Template Sequence  KQTTSVC. CYCSVGCGLIVHTDKKTNRAINVEGDPDHPINEG. . . . . . . SLCAKGASTWQLAENERRPANPLYR. . . . . .
Template Known Secondary structure 
.SSBTT


TTT


TT
TTTTT.......


TS
TTS
SS
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   11...... ..20.........30.........40.........50. ........60.........70......
 
   122.......130.........140.........150.........160.........170.........180..... ....
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Query Sequence  WREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKNYGPDR. . . . . . . . . . . . VAGF
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . AP. . GSDQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASV
Template Known Secondary structure  ............................
T..T
SS



TTS

S
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   77. .80.........90.........100.........110.........120......
 
   190.........200.........210.........220..... ....230.........240.........250.........260.......
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Query Sequence  SPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLP. . PASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHF
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Template Sequence  GSAAMDNEECWIY. QAWLRSLGLFYIEHQAR. IHSATVAALAESYGRGAMTNHWIDLKNSDVILMMGSNPAENHPISFKW
Template Known Secondary structure 

TTS
.TTB


GGG.

S

S
SS
TGGGGG
SS

STT
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   127..130......... 140.........150...... ...160.........170.........180.........190.........200....
 
   268.270.........280.........290.........300.........310.........320.........330.........340.......
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Query Sequence  FTEVRYKGTKTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRYTDMPMLVMLEERD
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Template Sequence  VMRAKDKGATLIHVDPRYTRTSTKCDLYAPLRSGSDIAFLNGMTKYILEKELYFK. . . . . . DYVVNYTNASFIVGEGFA.
Template Known Secondary structure  TT

SS

TTGGG
S


TT
TT
S
......BGGGBBB
TT

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   206...210.........220.........230.........240.........250.........260 .........270........
 
   348.350.........360.........370.........380.........390.........400.........410.........420.......
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Query Sequence  GYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKWNLEQRDGKTGEETELQLSLLGSQDEI
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Template Sequence  . . FEEGLF. . . AGYNKETRKYDKSKWGFERDENG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ..TT...TTTTTT
GGGG
B
B
TTS..............................................
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   279280.... .....290.........300.......
 
   428.430.........440.........450.........460.........470.........480.........490.........500.......
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Query Sequence  AEVGFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVKAYTPAW
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NPKRDETLKHPRCVFQIMKKH. . . . . . . . . . . . . . . . . . YERYDLDK
Template Known Secondary structure  .................................
B
B
TTS
STTB..................TT

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   308.310.........320........ .330......
 
   508.510.........520.........530.........540.........550.........560.........570.........580.......
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Query Sequence  AEQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQ
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Template Sequence  ISAICGTPKELILKVYDAYCATGK. PDKAGTIMYAMGWTQHTVGVQNIRAMSINQLLLGNIGVAGGG. . . . . . . . . VNAL
Template Known Secondary structure 


GGGS.TT





SSTT
SSSTT
S.........
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   337..340.........350.........360 .........370.........380.........390.........400.. ....
 
   588.590.........600.........610.........620.........630.........640.........650.........660.......
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Query Sequence  TGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAPQLGTNPL
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Template Sequence  RGEANVQGSTDHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVSKDPQSANWWSNFPKYSASYIKSMWP. . . . . . . . . . .
Template Known Secondary structure 
SBTTTT
BTTTTT

BTT

S





TT


GGGG
T...........
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   407..410.........420.........430.........440.........450.........460.........470.....
 
   668.670.........680.........690.........700.........710.........720.........730.........740.......
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Query Sequence  TIAGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQGKDLGQQ
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Template Sequence  . . . . . . DADLNEAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACSGANSN. . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ......TS
S

B
TT


STT


S

SSS......................
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   476...480.........490.........500.........510.........520.......
 
   748.750.........760.........770.........780.. .......790.........800.........810....
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Query Sequence  GGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLY. . . . . . . . . . . . . SDIILPTATWYEKDDMNTSDMHPFIHPLSAAV
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Template Sequence  . . . . . . . . . . KTREALTKLDWMVNVNIFDNETGSFWRGPDMDPKKIKTEVFFLPCAVAIEKEG. SISNSGRWMQWRYVGP
Template Known Secondary structure  ..........TT
SSS

TTTTGGGSTT

GGG


B

GGG

.
TT


SS
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   528.530.........540.........550.........560.........570.........580 .........590......
 
   815....820.........830.........840.........850.........860.... .....870.........880...
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Query Sequence  DPAWEAKSDWEIYKAIAKKFSEVCVGHLGKETDIVTLPIQHDSAAELAQP. . . . . . . . . . . LDVKDWKKGECDLIPGKTA
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Template Sequence  EPRKNAIPDGDLIVELAKRVQKLLAKTPGKLAAPVTKLKTDYWVNDHGHFDPHKIAKLINGFALKDFKVGDVEYKAGQQI
Template Known Secondary structure 


TT
B
S
TT

S
GGGGB
TTS
B

BBSS
TT
TT
B
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   597..600.........610.........620.........630.........640.........650.........660.........670......
 
   884.....890.........900.........910.........920. ........930.........940.........950.........960.
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Query Sequence  PHIMVVERDYPATYERFTSIGPLMEKIGNGGKGIAWNT. . QSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAP
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Template Sequence  ATFGHLQADGSTTSGCWIYTGSYTEKGNMAARRDKTQTDMQAKIGLYPGWTWAWPVNRRIIYNRASVD. . . . . . . LNGKP
Template Known Secondary structure  S
GGG

TTS
B

SSGGGTTSTTGGG
B




T

TTBSTTTT
SSTTGGGGB
.......TTS
B
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   677..680.........690.........700.........710.........720.........730.........740.... .....
 
   962.......970.........980.........990.........1000.........1010.........1020.........1030.........
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Query Sequence  ETNGQVAVKAWAALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTL
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Template Sequence  YAPEKAVVEWNAAEKKWVG. DVPDGPWPPQADKEKGKR. . . . . . . . . . . AFIMKPEGYAYLYGP. . . . GREDGPLPEY
Template Known Secondary structure  S
GGG
STTTT.S

SS
S

TT
TTT


...........S
TTSSSS
B
SS
T....TSTT
SS


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   750.........760........ .770.........780...... ...790.........800. ........810.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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