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Job DescriptionP09152
Confidence100.00%DateThu Jan 5 11:02:00 GMT 2012
Rank3Aligned Residues901
% Identity26%Templatec2ivfA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
Resolution1.88 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40.........50.... .....60.........70.........80.........90.........100.........110
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Query Sequence  EDGYRQRWQHDKIVRSTHGVNC. . TGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLK
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Template Sequence  EDIYRKEWKWDKVNWGSHLNICWPQGSCKFYVYVRNGIVWREEQAAQTPACNVDYVDYNPLGCQKGSAFNNNLYGDERVK
Template Known Secondary structure 
TTS

S


S

SS




TT





SSTTS



S


TTGGGTTSTTB

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   65....70.........80.........90.........100.........110.........120.........130.........140....
 
   111........120.........130.........140.........150.........160.........170.........180.........190
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Query Sequence  YPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKNYGPDRVAGFS
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Template Sequence  YPLKR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . VGKRGEGKWKRVSWDEAAGDIADSIIDSFEAQGSDGFILDA
Template Known Secondary structure  S
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SSTTS



GGGG

Template Predicted Secondary structure 

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   145.... 150.........160.........170.........180.........190
 
   191........200.........210.........220.........230.........240.........250.........260.........270
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Query Sequence  PIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTE
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Template Conservation                

    
                     
         
  

  

  
 
   
          
Template Sequence  PHVHAGSIAWGAGFRMTYLMDGVSPDINVDIGDTYMGAFHTFGKMHMGYSADNLLDAELIFMTCSNWSYTYPSSYHFLSE
Template Known Secondary structure 

STT
T
B
T


S



B

GGGGGG
SS


TTT
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   191........200.........210.........220.........230.........240.........250.........260.........270
 
   271........280.........290.........300.........310.........320.........330.........340.........350
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Query Sequence  VRYKGTKTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRYTDMPMLVMLEERDGYY
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Template Sequence  ARYKGAEVVVIAPDFNPTTPAADLHVPVRVGSDAAFWLGLSQVMIDEKLFDR. . . . . . QFVCEQTDLPLLVRMDT. . . . .
Template Known Secondary structure  T

SS

TTGGG
S


TT
TT
S
......BSTTSTTT.....
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   271........280.........290.........300.........310.........320.. .......330.........
 
   351........360.........370.........380.........390.........400.........410.........420.........430
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Query Sequence  AAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKWNLEQRDGKTGEETELQLSLLGSQDEIAEV
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Template Sequence  . . GKFLSAEDVD. . . . . . GGEAKQFYFFDEKAGSVRKASR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ..
SB
B......S

TT
TTTT
S........................................
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   340......... 350.........360.........370.
 
   431........440.........450.........460.........470.........480.........490.........500.........510
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Query Sequence  GFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVKAYTPAWAEQ
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Template Conservation  ..............          
 
     
  
    
 
 
  
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Template Sequence  . . . . . . . . . . . . . . GTLKLDFMPALEGTFSARLKNGKTIQVRTVFEGLREH. . . . . . . . . . . . . . . . . . LKDYTPEKASA
Template Known Secondary structure  ..............S



SS



S

TTS
..................GGGGS
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   372.......380.........390.........400........ .410.........
 
   511........520.........530.........540.........550.........560.........570.........580.........590
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Query Sequence  ITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGW
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Template Sequence  KCGVPVSLIRELGRKVAKK. . . . . . RTCSYIGFSSAKSYHGDLMERSLFLAMALSGNWGKPGTGAFAWAYS. . . . . . . . .
Template Known Secondary structure 


S......

TTTTTBTTTT
SSSTT

S
B



.........
Template Predicted Secondary structure 




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.........
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   420.........430........ .440.........450.........460.........470.........480....
 
   591........600.........610.........620.........630.........640.........650.........660.........670
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Query Sequence  QPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAPQLGTNPLTIA
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Template Conservation                                                                                  
Template Sequence  DDNMVYLGVMSKPTAQGGMDELHQMAEGFNKRTLEADPTSTDEMGNIEFMKVVTSAVGLVPPAMWLYYHVGYDQLWNNKA
Template Known Secondary structure 

SS
GGGTTT
TT

TT
SSTT
GG
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   485....490.........500.........510.........520.........530.........540.........550.........560....
 
   671........680.........690.........700.........710.........720.........730.........740.........750
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Query Sequence  GEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQGKDLGQQGGV
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Template Conservation                    .  
              

       

  
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Template Sequence  WTDPALKKSFGAYLDEAK. EKGWWTNDHIRPAPDKTPQVYMLLSQNPMRRKRSGA. . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  GS
TTSSS
.TTSS
TTTS
S
TTS


S

STT.........................
Template Predicted Secondary structure 

















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   565....570.........580.. .......590.........600.........610........
 
   751........760.........770.........780.........790.........800 .........810.........820.........
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Query Sequence  KPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMNT. SDMHPFIHPLSAAVDPAWEAKSDWEIYKA
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Template Sequence  . . . . . KMFPDVLFPKLKMIFALETRMSSSAMYADIVLPCAWYYEKHEMTTPCSGNPFFTFVDRSVAPPGECREEWDAIAL
Template Known Secondary structure  .....TTGGG
SSB

TTGGG
SB

TT



SSS

S

STT
B
Template Predicted Secondary structure  .....








































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   619620.........630.........640.........650.........660.........670.........680.........690...
 
   830.........840.........850.........860.........870.........880.........890.........900.........
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Query Sequence  IAKKFSEVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERDYPATYERFTSIGPLMEK
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Template Sequence  ILKKVGERAAARGLTE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FNDHNGRKRRYDELYKKFTMDGHLLTN
Template Known Secondary structure  TT

.....................................
TTS
GGGTTTTT

S
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   694.....700......... 710.........720.........730......
 
   910.........920.........930.........940.........950.........960.........970.........980..
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Query Sequence  . . . . . . . IGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAWAALSEFTGRD
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Template Conservation                         
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Template Sequence  EDCLKEMVDINRAVGVFAKDYTYEKFKKEGQTRFLSMGTGVSRYA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTSS
TT




S
TTS...................................
Template Predicted Secondary structure 

























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   737..740.........750.........760.........770.........780.
 
   983......990.........1000.........1010.........1020.........1030.........1040.........1050.........1060..
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Query Sequence  HTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQQLYQDHQWMRDFGESLLVY
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Template Conservation  ..............................                         
 


   
          
 

  
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HANEVDVTKPIYPMRWHFDDKKVFPTHTRRAQFYLDHDWYLEAGESLPTH
Template Known Secondary structure  ..............................T
S


TTS


S
S



SSTTSSB





T
SS


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   782.......790.........800.........810.........820.........830.
 
   1063......1070.........1080.........1090.........1100.........1110.........1120.........1130.........1140..
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Query Sequence  RPPIDTRSVKEVIGQKSNGNQEKALNFLTPHQKWGIHSTYSDNLLMLTLGRGGPVVWLSEADAKDLGIADNDWIEVFNSN
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Template Conservation      .............     


 
 
       

    
   
        
 


 

   

 


 
 
 
  
Template Sequence  KDTP. . . . . . . . . . . . . MVGGDHPFKITGGHPRVSIHSTHLTNSHLSRLHRGQPVVHMNSKDAAELGIKDGDMAKLFNDF
Template Known Secondary structure 



.............
TTSS
S



SSSSTTTTTT
TTS
SS
TT

TT

SS
Template Predicted Secondary structure 



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   832... ....840.........850.........860.........870.........880.........890........
 
   1143......1150.........1160.........1170.........1180.........1190.........1200.........1210...... ...1220.
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Query Sequence  GALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITQQRGGIHNSVTRITPKPTHMIGGYAHLAYGFNYYGTVG. SNRDE
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Template Conservation 
 
   
 

  
 

 
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Template Sequence  ADCEIMVRTAPNVQPKQCIVYFWDAHQYK. . . . . . . . . GWKPYDILLIGMPKPLHLAGGYEQFRYYFMNGSPAPVTDRGV
Template Known Secondary structure 
TTS
TT




GGGSG.........GG

GGGG





GGGG

SBTTB

BTTB
S

S


BT
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   899900.........910.........920....... ..930.........940.........950.........960.........
 
   1222......
Predicted Secondary structure 
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Query Sequence  FVVVRKM
Query Conservation         
Alig confidence 






Template Conservation   
 
 

Template Sequence  RVSIKKA
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 






   970......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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