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Job DescriptionP09152
Confidence100.00%DateThu Jan 5 11:02:00 GMT 2012
Rank15Aligned Residues647
% Identity26%Templatec2iv2X_
PDB info PDB header:oxidoreductaseChain: X: PDB Molecule:formate dehydrogenase h; PDBTitle: reinterpretation of reduced form of formate dehydrogenase h2 from e. coli
Resolution2.27 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70.........80.........90.........100....... ..110.........
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Query Sequence  KIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSAN. . . . RLKYPMMRKRLM
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Template Sequence  KKVVTVC. PYCASGCKINLVVDNGKIVRAEAA. QGKTNQG. . . . . . . TLCLKGYYGWDFINDTQILTPRLKTPMIR. . . .
Template Known Secondary structure 
.SSBTT

TT
.

TTTTT.......


TTGGGG


SSS
B

S

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   2...... .10.........20.........30.. ....... 40.........50.........60........
 
   120.........130.........140.........150.........160.........170.........180.........190.........
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Query Sequence  KMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVS
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Template Conservation  ................................    
    






  

  
  
    
   
             
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RQRGGKLEPVSWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNET
Template Known Secondary structure  ................................
STTS




GGG

SSTT
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   6970.........80.........90.........100.........110......
 
   200.........210.........220..... ....230.........240.........250.........260.........270.......
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Query Sequence  YASGARYLSLIGGTCLSFYDWYCDLP. . PASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTK
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Template Conservation                                     
         
   

 

  
 
              
   
 
Template Sequence  NYVMQKFARAVIGTNNVDCCARVHGPSVAGLHQSVGNGAMSNAINEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAK
Template Known Secondary structure  TT




SS



SSS
SS

S
SS
GGGGGG
SS


TT
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   117..120.........130.........140.........150.........160.........170.........180.........190......
 
   278.280.........290.........300.........310.........320.........330.........340.........350.......
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Query Sequence  TVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRMLR
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Template Sequence  IIVCDPRKIETARIADMHIALKNGSNIALLNAMGHVIIEENLYDK. . . . . . AFVASRTEG. . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
SS

T
S


TT
TT
S
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   198.200.........210.........220.........230.........240.. .......250.
 
   358.360.........370.........380.........390.........400.........410.........420.........430.......
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Query Sequence  AADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKWNLEQRDGKTGEETELQLSLLGSQDEIAEVGFPYFGG
Query Conservation    
            
  
  
  
    
                                                  
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
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   438.440.........450.........460.........470.........480.........490.........500.........510.......
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Query Sequence  DGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVKAYTPAWAEQITGVSRS
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Template Conservation  .....................................

 
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . FEEYRKI. . . . . . . . . . . . . . . . . . VEGYTPESVEDITGVSAS
Template Known Secondary structure  .......................................................T

SGGG


Template Predicted Secondary structure  .......................................................





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   252...... .260.........270......
 
   518.520.........530.........540.........550.........560.........570.........580.........590.......
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Query Sequence  QIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFAL
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Template Conservation   
  

     
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Template Sequence  EIRQAARMYAQA. . . . . KSAAILWGMGVTQFYQGVETVRSLTSLAMLTGNLGKPHAGVN. . . . . . . . . PVRGQNNVQGAC
Template Known Secondary structure  S.....SSTTGGGSSSTT
SSSTT
S.........
SBTT
Template Predicted Secondary structure 
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   277..280........ .290.........300.........310.........320.........330 .........340..
 
   598.600.........610.........620.........630.........640.........650.........660.........670.......
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Query Sequence  DWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAEKAG
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Template Conservation    
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Template Sequence  DMGALPDTYPGYQYVKDPANREKFAKAWGVESLPAHTGY. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT
BTTGGGTT
TT
S



S


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   343......350.........360.........370.........380.
 
   678.680.........690.........700.........710.........720.........730.........740.........750.......
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Query Sequence  MNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQGKDLGQQGGVKPEEVDW
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Template Conservation  ................           
 

 
     

    
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Template Sequence  . . . . . . . . . . . . . . . . RISELPHRAAHGEVRAAYIMGEDPLQTDAELS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................
GGGTTS

S

SSS................................
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   382.......390.........400.........410...
 
   758.760.........770.........780.........790.........800.........810.........820.........830.......
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Query Sequence  QDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEV
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Template Sequence  AVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGEHEG. VFTAADRGFQRFFKAVEPKWDLKTDWQIISEIATRMGYP
Template Known Secondary structure  SSSB

T
SB

BTTB
.
TTS


S

SSS
B
TT

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   414.....420.........430.........440.........450... ......460.........470.........480.........490..
 
   838.840.........850.........860.........870.........880.........890.........900.........910.......
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Query Sequence  CVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERDYPATYERFTSIGPLMEKIGNGGKGI
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Template Sequence  MHYNNTQEIWDELRHLCPDFYGATYEKMGELGFIQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 


SS
TTTTT

TTT

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   493......500.........510.........520.......
 
   918.920.........930.........940.........950.........960.........970.........980.........990.......
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Query Sequence  AWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAWAALSEFTGRDHTHLALNKEDEKIRF
Query Conservation        
                                        
              
                 
Template Conservation  ................................................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ................................................................................
Template Predicted Secondary structure  ................................................................................
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   998.1000.........1010.........1020.........1030.........1040.........1050.........1060.........1070.......
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Query Sequence  RDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKEVIGQ
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Template Sequence  . . . . . . . . . . . . . . . . . . WPCRDTSDADQGTSYLFKEKFDTPNGLAQFFT. . . . . . . . . . . . CDWVAPID. . . . . . . . . .
Template Known Secondary structure  ..................S



SSTT

B
SSS
SS

SSTTS



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SS..........
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   528.530.........540.........550......... 560.......
 
   1078.1080.........1090..... ....1100.........1110...... ...1120.........1130.........1140.........1150....
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Query Sequence  KSNGNQEKALNFLTPHQK. . WGIHSTYSDNLLMLTLGRGGP. VVWLSEADAKDLGIADNDWIEVFNSNGALTARAVVSQR
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Template Sequence  . . KLTDEYPMVLSTVREVGHYSCRSMTG. NCAALAALADEPGYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQVSDR
Template Known Secondary structure  ..


SSS



TT

SS
TTGG.GSTT

SS
T

TT

SS
SS
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   568.570.........580.........590... ......600.........610.........620.........630.........640....
 
   1155....1160........
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Query Sequence  VPAGMTMMYHAQER
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Template Conservation 
  
 
    
   
Template Sequence  PNKGAIYMTYQWWP
Template Known Secondary structure  S
TT





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   645....650........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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