Job Description P09152 Confidence 29.28% Date Thu Jan 5 11:02:00 GMT 2012 Rank 191 Aligned Residues 45 % Identity 13% Template c1zc1A_ PDB info PDB header:protein turnover Chain: A: PDB Molecule:ubiquitin fusion degradation protein 1; PDBTitle: ufd1 exhibits the aaa-atpase fold with two distinct2 ubiquitin interaction sites Resolution UNK

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		1087	.	.	1090	.	.	.	.	.	.	.	.	.	1100				.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		L	N	F	L	T	P	H	Q	K	W	G	I	H	S	.	.	.	T	Y	S	D	N	L	L	M	L	T	L	G	R	G	G	P	V	V	W	L	S	E	A	D	A	K	D	L	G	I	A	D	N	D	W	I	E	V	F	N
Query Conservation																.	.	.
Alig confidence																.	.	.				.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.
Template Sequence		F	K	L	T	A	N	E	T	G	R	V	T	H	G	G	V	L	E	F	I	.	.	.	.	.	.	.	.	.	A	E	E	G	R	V	Y	L	P	Q	W	M	M	E	T	L	G	I	Q	P	G	S	L	L	Q	I	S	S
Template Known Secondary structure							T	T	T													.	.	.	.	.	.	.	.	.		S	S														T			T	T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.										.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions