 |
Job Description | P09152 | Confidence | 44.05% | Date | Thu Jan 5 11:02:00 GMT 2012 |
Rank | 145 | Aligned Residues | 137 |
% Identity | 15% | Template | c1ir6A_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:exonuclease recj; |
PDBTitle: crystal structure of exonuclease recj bound to manganese
|
Resolution | 2.90 Å |
|
 |
  |   |
167 | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | E | L | I | A | A | S | N | V | Y | T | I | K | N | Y | G | P | D | R | V | A | G | F | S | P | I | P | A | M | S | M | V | S | Y | A | S | G | A | R | Y | L | S | L | I | G | G | T | C | L | S | F | Y | D | W | Y | C | D | L | P | P | A | S | P | Q | T | W | G | E | Q | T | D | V | P | E | S | A | D | W | Y | N |
Query Conservation |   |
|
|   |
|
|   |
|
|   |   |
|   |   |   |
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |   |
|   |
|   |
|   |   | . | . |   |   |   |
|   |
|   |   |
|   |
|   |
|
|
|   |
|
|   |   |
|   |   |   |
|   |   |   |
|
|   |   |   |
|   |   | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   | . |   |   |   |   |   |   |
Template Sequence |   |
L | R | E | A | A | A | L | L | E | E | A | L | R | Q | . |
. |
G | K | R | I | R | V | H | G | D | Y | D | A | D | G | L | T | G | T | A | I | L | V | R | G | L | A | A | L | G | A | D | V | H | P | F | I | . |
. |
. |
. |
. |
. |
P | H | R | L | E | E | G | Y | G | V | L | M | E | R | V | . |
P | E | H | L | E | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  | T | . | . | T |
|  |  |  |  |  |
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
| . | . | . | . | . | . |
|
| T | T | T | S |
| S | S |
|
| G | G | G |  | . |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  | . |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
58 | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | |
|
. | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | |
|
|
|
|
|
. | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | |
. | . | . | . | . | . |
  |
  |   |
247 | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  | . | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | S | Y | I | I | A | W | G | S | N | V | P | Q | T | R | T | P | D | A | H | F | F | T | E | V | R | Y | K | G | T | K | T | V | A | V | T | P | D | Y | A | E | I | A | K | L | C | D | L | W | L | . |
. |
. |
. |
. |
. |
. |
A | P | K | Q | G | T | D | A | A | M | A | L | A | M | G | H | V | M | L | R | E |
Query Conservation |   |
|
|   |
|
|   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |
|
|
|   |   |
|
|
|
|
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|   |
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|   |
|
|   |
|
|
|   |   |
|
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|
|   |
|   |
|   |   | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |   |   |
|   |   |   |
|   |   |   |
Template Sequence |   |
S | D | L | F | L | T | V | D | C | G | I | T | . |
. |
. |
. |
. |
N | H | A | E | L | R | E | L | L | E | N | G | V | E | V | I | V | T | D | H | H | T | P | G | K | T | P | P | P | G | L | V | V | H | P | A | L | T | P | D | L | K | E | K | P | T | G | A | G | V | A | F | L | L | L | W | A | L | H | E | R |
Template Known Secondary structure |   |
| S |  |  |  |  | S | S |
|
| T | T | . | . | . | . | . |
| G | G | G |  |  |  |  | T | T | S |
|
|  |  |  |  |  |
|
| S |
|
|
| S | S |
|
| S | S |  |  |  |
| G | G | G | S | T | T |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
| . | . | . | . | . |
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
129 | 130 | . | . | . | . | . | . | . | . | . | 140 | |
|
|
|
|
. | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|