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Job DescriptionP09152
Confidence100.00%DateThu Jan 5 11:02:00 GMT 2012
Rank5Aligned Residues918
% Identity19%Templatec1h0hA_
PDB info PDB header:dehydrogenaseChain: A: PDB Molecule:formate dehydrogenase (large subunit); PDBTitle: tungsten containing formate dehydrogenase from2 desulfovibrio gigas
Resolution1.8 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.... .....70.........80.........90.........100.........110.........120.
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Query Sequence  KIVRSTHGVNCTGSCSWKIYV. . KNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPMMRKRLMKM
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Template Sequence  KQTTSVC. CYCSVGCGLIVHTDKKTNRAINVEGDPDHPINEG. . . . . . . SLCAKGASTWQLAENERRPANPLYR. . . . . .
Template Known Secondary structure 
.SSBTT


TTT


TT
TTTTT.......


TS
TTS
SS
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   11...... ..20.........30.........40.........50. ........60.........70......
 
   122.......130.........140.........150.........160.........170.........180...... ...190
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Query Sequence  WREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKNYGPDRV. . . . . . . . . . . AGFS
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Template Conservation  ............................ 
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . AP. . GSDQWEEKSWDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASV
Template Known Secondary structure  ............................
T..T
SS



TTS

S
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   77. .80.........90.........100.........110.........120......
 
   191........200.........210.........220.. .......230.........240.........250.........260.........
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Query Sequence  PIPAMSMVSYASGARYLSLIGGTCLSFYDWYC. DLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFT
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Template Conservation                      

                     
         
   

 

  
 

  
 
       
Template Sequence  GSAAMDNEECWIYQAWLRSLGLFYIEHQARIHSATVAALAESYGRGAMTNHWIDLKNSDVILMMGSNPAENHPISFKWVM
Template Known Secondary structure 

TTS
TTB


GGG

S

S
SS
TGGGGG
SS

STT
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   127..130.........140.........150.........160.........170.........180.........190.........200......
 
   270.........280.........290.........300.........310.........320.........330.........340.........
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Query Sequence  EVRYKGTKTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRYTDMPMLVMLEERDGY
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Template Sequence  RAKDKGATLIHVDPRYTRTSTKCDLYAPLRSGSDIAFLNGMTKYILEKELYFK. . . . . . DYVVNYTNASFIVGEGFA. . .
Template Known Secondary structure  TT

SS

TTGGG
S


TT
TT
S
......BGGGBBB
TT

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   208.210.........220.........230.........240.........250.........260 .........270........
 
   350.........360.........370.........380.........390.........400.........410.........420.........
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Query Sequence  YAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIGFRWGEKGKWNLEQRDGKTGEETELQLSLLGSQDEIAE
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Template Conservation  ...                             ................................................
Template Sequence  . . . FEEGLFAGYNKETRKYDKSKWGFERDENG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ...TTTTTTTT
GGGG
B
B
TTS................................................
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   279280.........290.........300.......
 
   430.........440.........450.........460.........470.........480.........490.........500.........
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Query Sequence  VGFPYFGGDGTEHFNKVELENVLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVKAYTPAWAE
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Template Conservation  ...............................            
 
  
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NPKRDETLKHPRCVFQIMKKH. . . . . . . . . . . . . . . . . . YERYDLDKIS
Template Known Secondary structure  ...............................
B
B
TTS
STTB..................TT

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   308.310.........320........ .330........
 
   510.........520.........530.........540.........550.........560.........570.........580.........
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Query Sequence  QITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTG
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Template Sequence  AICGTPKELILKVYDAYCATGK. PDKAGTIMYAMGWTQHTVGVQNIRAMSINQLLLGNIGVAGGGVNALRGE. . . . . . . .
Template Known Secondary structure 


GGGS.TT





SSTT
SSSTT
S

SB........
Template Predicted Secondary structure 





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   339340.........350.........360 .........370.........380.........390.........400.........
 
   590.........600.........610.........620.........630.........640.........650.........660.........
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Query Sequence  WQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAPQLGTNPLTI
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Template Conservation  . 
  
    
      
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Template Sequence  . ANVQGSTDHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVSKDPQSANWWSNFPKYSASYIKSMWP. . . . . . . . . . . . .
Template Known Secondary structure  .TTTT
BTTTTT

BTT

S





TT


GGGG
T.............
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   410.........420.........430.........440.........450.........460.........470.....
 
   670.........680.........690.........700.........710.........720.........730.........740.........
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Query Sequence  AGEAEKAGMNPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQGKDLGQQGG
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Template Sequence  . . . . DADLNEAYGYLPKGEDGKDYSWLTLFDDMFQGKIKGFFAWGQNPACSGANSN. . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ....TS
S

B
TT


STT


S

SBS........................
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   476...480.........490.........500.........510.........520.......
 
   750.........760.........770.........780... ......790.........800.........810......
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Query Sequence  VKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYS. . . . . . . . . . . . . DIILPTATWYEKDDMNTSDMHPFIHPLSAAVDP
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Template Sequence  . . . . . . . . KTREALTKLDWMVNVNIFDNETGSFWRGPDMDPKKIKTEVFFLPCAVAIEKEG. SISNSGRWMQWRYVGPEP
Template Known Secondary structure  ........TT
SSS

TTTTGGGSTT

GGG


B

GGG

.
TT


SS

Template Predicted Secondary structure  ........





























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   528.530.........540.........550.........560.........570.........580 .........590........
 
   817..820.........830.........840.........850.........860.........870.........880.........890......
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Query Sequence  AWEAKSDWEIYKAIAKKFSEVCVGHLGKETDIVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERDYPAT
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Template Sequence  RKNAIPDGDLIVELAKRVQKLLAKTPGKLAAPVTKLKTDYWVNDHGHFDPHKIAKLINGFALKDFKVGDVEYKAGQQIAT
Template Known Secondary structure 
TT
B
S
TT

S
GGGGB
TTS
B

BBSS
TT
TT
B
S
Template Predicted Secondary structure 















































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   599600.........610.........620.........630.........640.........650.........660.........670........
 
   897..900.... .....910.........920.........930.........940.........950.........960.........970.
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Query Sequence  YERFTSIG. . . . . PLMEKIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKA
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Template Conservation         
                                            
                           
Template Sequence  FGHLQADGSTTSGCWIYTGSYTEKGNMAARRDKTQTDMQAKIGLYPGWTWAWPVNRRIIYNRASVDLNGKPYAPEKAVVE
Template Known Secondary structure  GGG

TTS
B

SSGGGTTSTTGGG
B




T

TTBSTTTT
SSTTGGGGB
TTS
BS
GGG
S
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   679680.........690.........700.........710.........720.........730.........740.........750........
 
   972.......980.........990.........1000.........1010.........1020.........1030.........1040.........1050.
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Query Sequence  WAALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQQLYQDHQW
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Template Conservation                                ..................................     
          
Template Sequence  WNAAEKKWVGDVPDGPWPPQADKEKGKRAF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IMKPEGYAYLYGPGRE
Template Known Secondary structure  TTTTS

SS
S

TT
TTT


S
..................................TTSSSS
B
SS
TTST
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   759760.........770.........780........ .790.........800....
 
   1052.......1060...... ...1070.........1080.........1090.........1100 .........1110......
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Query Sequence  MRDFGESLLVYRPPI. . . . . . . . . . . . . . DTRSVKEVIGQKSNGNQEKALNFLTPHQKWGIHS. TYSDNLLMLTLGRGGP
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Template Conservation    ....  
    
                                 

  
 
 
     

   
 
   
    
  
Template Sequence  DG. . . . PLPEYYEPMECPVIEHPFSKTLHNPTALHFATEEKAVCDPRYPFICSTYRVTEHWQTGLMTRNTPWLLEAEPQM
Template Known Secondary structure  T
....SS






SSS



SS
S

S
TT

SS

SS




TTS


TT

TTSTSS
S
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   805. ...810.........820.........830.........840.........850.........860.........870.........880
 
   1117..1120.........1130.........1140.........1150.........1160.........1170 .........1180.........1190.....
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Query Sequence  VVWLSEADAKDLGIADNDWIEVFNSNGALTARAVVSQRVPAGMTMMYHAQERIV. NLPGSEITQQRGGIHNSVTRITPKP
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Template Conservation   
 


 

  



 

 
 
 
  
 
   
 

  
 

 
       
  
   
       
   
 

    

Template Sequence  FCEMSEELATLRGIKNGDKVILESVRGKLWAKAIITKRIKPFAIQGQQVHMVGIPWHYGWSFPKNGGDAANILTPSVGNP
Template Known Secondary structure 
T

TT
TT
TT


TT
S


TTSSTTS


GGGS

BSSS
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   881........890.........900.........910.........920.........930.........940.........950.........960
 
   1196...1200.........1210.........1220........
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Query Sequence  THMIGGYAHLAYGFNYYGTVGSNRDEFVVVRKM
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Template Conservation   

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Template Sequence  NTGIPET. . . . . . . . . . . . . . . . KAFMVNVTKA
Template Known Secondary structure  SSBSB

................S

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   961...... ..970.......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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