Job Description P06149 Confidence 100.00% Date Thu Jan 5 10:59:07 GMT 2012 Rank 4 Aligned Residues 443 % Identity 20% Template c3pm9A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of a putative dehydrogenase (rpa1076) from2 rhodopseudomonas palustris cga009 at 2.57 a resolution Resolution 2.57 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		T	D	N	K	A	F	L	N	E	L	A	R	L	V	G	S	S	H	L	L	T	D	P	A	K	T	A	R	Y	R	K	G	F	R	.	S	G	Q	G	D	A	L	A	V	V	F	P	G	S	L	L	E	L	W	R	V	L	K	A	C	V	T	A	D	K	I	I	L	M	Q	A	A	N	T	G	L	T	E	G	S
Query Conservation																																				.
Alig confidence																																				.
Template Conservation
Template Sequence		T	L	S	P	E	L	I	A	R	F	T	A	I	V	G	D	K	H	A	L	T	D	P	L	E	L	E	A	Y	I	T	E	E	R	N	L	Y	R	G	H	S	P	L	V	L	R	P	G	S	T	E	E	V	V	A	I	C	K	L	A	N	E	A	R	V	A	L	V	P	Q	G	G	N	T	G	L	V	G	G	Q
Template Known Secondary structure																	G	G	G				S									B		T	T				B				S							S															T							S	S	S			S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		T	P	N	G	N	D	Y	D	R	D	V	V	I	I	S	T	L	R	L	D	K	L	H	V	L	G	K	G	.	E	Q	V	L	A	Y	P	G	T	T	L	Y	S	L	E	K	A	L	K	P	L	G	R	E	P	H	S	V	I	G	S	S	C	I	G	A	S	V	I	G	G	I	C	N	N	S	G	G	S	L	V
Query Conservation																														.
Alig confidence						.	.	.	.	.																				.																														.
Template Conservation						.	.	.	.	.																																																		.
Template Sequence		T	P	H	N	.	.	.	.	.	G	E	V	V	I	S	L	K	R	X	D	K	I	R	E	I	D	T	S	S	N	T	I	T	V	E	A	G	A	I	L	Q	R	V	Q	E	K	A	A	E	V	D	R	L	F	P	L	S	L	.	G	A	Q	G	S	C	T	I	G	G	N	L	S	T	N	A	G	G	T	A	A
Template Known Secondary structure					S	.	.	.	.	.	S							T	T									T	T	T	T						T	T		B											T	T								.	T	T	T	T	T		B								T				T	T
Template Predicted Secondary structure						.	.	.	.	.																																																		.
Template SS confidence
		91	.	.	.						.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.		.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	G	P	A	Y	T	E	M	S	L	F	A	R	I	N	E	D	G	K	L	T	L	V	N	H	L	G	I	D	L	G	E	T	P	E	Q	I	L	S	K	L	D	D	D	R	I	K	D	D	D	V	R	H	D	G	R	H	A	H	D	Y	D	Y	V	H	R	V	R	D	I	E	A	D	T	P	A	R	Y	N
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	Y	G	L	A	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	X	A	L	G	V	E	V	V	L	A	D	G	R	V	X	N	L	L	S	K	L	K	.	.	.	.	.	.	.	.	.	.	K	D	N	T	G	Y	D	L	R	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										T	T	S										S	.	.	.	.	.	.	.	.	.	.				S	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.																	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.											.	.	.	.	.	200	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	P	D	R	L	F	E	S	S	G	C	A	G	K	L	A	V	F	A	V	R	L	D	T	F	E	A	E	K	N	Q	Q	V	F	Y	I	G	T	N	Q	P	E	V	L	T	E	I	R	R	H	I	L	A	N	F	E	N	L	P	V	A	G	E	Y	M	H	R	D	I	Y	D	I	A	E	K	Y	G	K	D
Query Conservation
Alig confidence		.	.	.	.											.	.
Template Conservation		.	.	.	.											.	.
Template Sequence		.	.	.	.	L	F	I	G	A	E	G	T	L	G	.	.	I	I	T	A	A	T	L	K	L	F	P	K	P	R	A	V	E	T	A	F	V	G	L	Q	S	P	D	D	A	L	K	L	L	G	I	A	Q	G	E	A	A	G	N	L	T	S	F	E	L	I	A	E	T	P	L	D	F	S	V	R	H	A	N	N
Template Known Secondary structure		.	.	.	.			T	T	S	T	T	S	S		.	.														S										S																	G	G	G																			T	T
Template Predicted Secondary structure		.	.	.	.											.	.
Template SS confidence
						205	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	L	M	I	D	K	L	G	T	D	K	M	P	F	F	F	N	L	K	G	R	T	D	A	M	L	E	K	V	K	F	F	R	P	H	F	T	D	R	A	M	Q	K	F	G	H	L	F	P	S	H	L	P	P	R	M	K	N	W	R	D	K	Y	E	H	H	L	L	L	K	M	A	G	D	G	V	G	E	A
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	D	P	L	E	A	R	Y	P	W	Y	V	L	I	E	L	S	S	P	R	D	D	A	R	A	A	L	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Known Secondary structure					S	S	S			S										S	S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.																																																				.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.			480	.	.
Predicted Secondary structure																																																																													.	.
Query SS confidence																																																																													.	.
Query Sequence		K	S	W	L	V	D	Y	F	K	Q	A	E	G	D	F	F	V	C	T	P	E	E	G	S	K	A	F	L	H	R	F	A	A	A	G	A	A	I	R	Y	Q	A	V	H	S	D	E	V	E	D	I	L	A	L	D	I	A	L	R	R	N	D	T	E	W	Y	E	H	L	P	P	E	I	D	S	.	.	Q	L	V
Query Conservation																																																																													.	.
Alig confidence																																												.	.	.	.	.	.	.																											.	.
Template Conservation																																												.	.	.	.	.	.	.
Template Sequence		I	L	E	R	G	F	E	D	G	I	V	V	D	A	A	I	A	N	S	V	Q	Q	Q	Q	A	F	W	K	L	R	E	E	I	S	P	A	Q	K	P	E	G	G	.	.	.	.	.	.	.	S	I	K	H	D	I	S	V	P	V	A	A	V	P	Q	F	I	E	Q	A	N	A	A	V	V	A	L	I	P	G	A
Template Known Secondary structure									T	T										S													T					T	G	G	G			.	.	.	.	.	.	.										G	G	G																S	T	T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.								350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.								.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.											.	.	.	540	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	K	L	Y	Y	G	H	F	M	C	Y	V	F	H	Q	D	Y	I	V	K	K	G	.	.	.	.	.	.	.	V	D	V	H	A	L	K	E	Q	M	L	E	L	L	Q	Q	R	G	A	Q	Y	P	A	E	H	N	V	G	H	L	Y	K	.	.	.	.	.	.	.	.	.	.	A	P	E	T	L	Q	K	F	Y
Query Conservation																								.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	P	V	P	F	G	H	L	G	D	G	N	I	H	Y	N	V	S	Q	P	V	G	A	D	K	A	E	F	L	A	R	W	H	D	V	S	Q	V	V	F	E	V	V	L	R	L	G	G	S	I	S	A	E	H	G	I	G	V	X	K	R	D	E	L	A	E	V	K	D	K	T	A	I	E	L	X	R	S	I	K
Template Known Secondary structure									G	G	G	T										T	T								T	T															T	T		B	S		S	S	S			T	T	T	T								S
Template Predicted Secondary structure
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
		546	.	.	.	550	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	N	D	P	T	N	S	M	N	P	G	I	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	L	D	P	H	G	I	X	N	P	G	K	V
Template Known Secondary structure						T	T	S		B	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		461	.	.	.	.	.	.	.	.	470	.	.	.	.