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Job DescriptionP06149
Confidence100.00%DateThu Jan 5 10:59:07 GMT 2012
Rank7Aligned Residues450
% Identity15%Templatec3bw7A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:cytokinin dehydrogenase 1; PDBTitle: maize cytokinin oxidase/dehydrogenase complexed with the allenic2 cytokinin analog ha-1
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  NELARLVGSSHLLTDPAKTARYRKG. FRSGQGDALAVVFPGSLLELWRVLKACVTA. . . DKIILMQAANTGLTEGSTPNG
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Template Sequence  ASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTADLVALLSAANSTPGWPYTIAFRGRGHSLMGQAF. . .
Template Known Secondary structure  TT

STSB
TT
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   36...40.........50.........60.........70.........80.........90.........100.........110..
 
   90.........100....... ..110... ......120.........130.........140.........150.........160...
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Query Sequence  NDYDRDVVIISTLRLDKL. . . . . HVLGKG. EQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGSL
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Template Sequence  . . . APGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSWT. DYLY. LTVGGTLSNAGISGQ
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TTSGGGGG
SSSS
S
TTSSTT
BTTTSS

.S
S
.SBTT



TT
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   113......120.........130.........140.........150.........160........ .170.. .......180.......
 
   164.....170.........180.........190.........200.........210.........220.........230.........240...
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Query Sequence  VQRGPAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRHDGRHAHDYDYVHRVRDIEADTPARY
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Template Sequence  AFRHGPQIS. . . . . . . . . . . . . . . . NVLEMDVITGHGEMVTCS. . . . . . . . . . . . . . . KQLNADLFD. . . . . . . . . . . . .
Template Known Secondary structure 

GGG................STTS
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   188.190...... ...200.........210.... .....220...
 
   244.....250.........260.........270.........280.........290.........300.........310.........320...
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Query Sequence  NADPDRLFESSGCAGKLAVFAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEKYGK
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Template Sequence  . . . . . AVLGGLGQFG. . VITRARIAVEPAPARARWVRLVYTDFAAFSADQERLTAPR. . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  .....TT
TTSS..

SS

B
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   224.....230... ......240.........250.........260.........270...
 
   324.....330.........340.........350.........360.........370.........380.........390.........400...
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Query Sequence  DTFLMIDKLGTDKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHLLLKMAGDGVGE
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Template Sequence  . . . . . . . . . . SFGPMSYVEGSVFVNQSLATDLANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATAAAAAVDQE
Template Known Secondary structure  ..........
B
S
SGGGTTSSS
T
S
S
TT
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   280.........290.........300.........310.........320.........330.........340.........
 
   404.....410.........420.........430.........440.........450.........460.........470.........480...
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Query Sequence  AKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVEDILALDIALRRNDTEWYEHLPPEIDSQLVH
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Template Sequence  LASVLGTLSYVEGFAFQRDV. . . . . AYAAFLDRVHGEEVALNKLGLWRVPHPWLNMFVPRSRIADFDRGVFKGILQGTDI
Template Known Secondary structure  T

S
TT
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GGG




TTTS

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   350.........360......... 370.........380.........390.........400.........410.........420....
 
   484.... .490.........500. ........510.........520.........530.....
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Query Sequence  KLYYG. . . . . . . . . . . . . . . . . HFMCYVFHQDYIV. . . . . KKGVDVHALKEQMLELLQQRGAQYPAEHNVGHLY. . . . . .
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Template Sequence  VGPLIVYPLNKSMWDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILR. FCDLAGIQYKTYLARHTDRSDWVR
Template Known Secondary structure 
S
GGGS
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STT
.TT


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   425....430.........440.........450.........460.........470......... 480.........490.........500...
 
   536...540.........550.........560..
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Query Sequence  . . . . KAPETLQKFYRENDPTNSMNPGIGKTS
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Template Sequence  HFGAAKWNRFVEMKNKYDPKRLLSPG. QDIF
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TT

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GG.G
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   504.....510.........520......... 530...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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