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Job DescriptionP06149
Confidence100.00%DateThu Jan 5 10:59:07 GMT 2012
Rank8Aligned Residues445
% Identity11%Templatec2exrA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:cytokinin dehydrogenase 7; PDBTitle: x-ray structure of cytokinin oxidase/dehydrogenase (ckx)2 from arabidopsis thaliana at5g21482
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  SSHLLTDPAKTARYRKG. FRSGQGDALAVVFPGSLLELWRVLKACVT. ADKIILMQAANTGLTEGSTPNGNDYDRDVVII
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Template Sequence  QGEILCGGAAADIAGRDFGGXNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQAX. . . . . . AEGGLVV
Template Known Secondary structure  SS
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   37..40.........50.........60.........70.........80.........90.........100... ......110
 
   100....... ..110... ......120.........130.........140.........150.........160.........170..
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Query Sequence  STLRLDKL. . . . . . HVLGKG. EQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGSLVQRGPAYTE
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Template Sequence  DXSTTAENHFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLAPRSWTDYLG. LTVGGTLSNAGVSGQAFRYGPQTS
Template Known Secondary structure  GGGGTTS


SSSSSTT
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S.SBTT



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   111........120.........130.........140.........150.........160..... ....170.........180.........
 
   173......180.........190.........200.........210.........220.........230.........240.........250..
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Query Sequence  MSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRHDGRHAHDYDYVHRVRDIEADTPARYNADPDRLFE
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Template Sequence  . . . . . . . . . . . . . . . . NVTELDVVTGNGDVVTCS. . . . . . . . . . . . . . . EIENSELFF. . . . . . . . . . . . . . . . . . SVLG
Template Known Secondary structure  ................STTS
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   190.........200....... ..210...... ...220
 
   253......260.........270.........280.........290.........300.........310.........320.........330..
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Query Sequence  SSGCAGKLAVFAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEKYGKDTFLMIDKL
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Template Sequence  GLGQFG. . IITRARVLLQPAPDXVRWIRVVYTEFDEFTQDAEWLVSQ. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   221..... ...230.........240.........250.........260.....
 
   333......340.........350.........360.........370.........380.........390.........400.........410..
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Query Sequence  GTDKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHLLLKMAGDGVGEAKSWLVDYF
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Template Sequence  . . . . . . . KNESSFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSDSNSTIDKRVERL
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TTTSGGGS
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   266...270.........280.........290.........300.........310.........320.........330........
 
   413......420.........430.........440.........450.........460.........470.........480........
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Query Sequence  KQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVEDILALDIALRRNDTEWYEHLPPEIDSQLVHKLYYG. . . .
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Template Sequence  IGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPHPWLNLFVSKRDIGDFNRTVFKELVKNGVNGPXLVYPLL
Template Known Secondary structure  TT



TT
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   339340.........350.........360.........370.........380.........390.........400.........410........
 
   489490.........500. ........510.........520.........530..... ....
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Query Sequence  . . . . . . . . . . . . HFMCYVFHQDYIV. . . . . . . . . KKGVDVHALKEQMLELLQQRGAQYPAEHNVGHLY. . . . . . . . KAPE
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Template Conservation                                                        
                   

    
Template Sequence  RSRWDDRTSVVIPEEGEIFYIVALLRFVPPCAKVSSVEKXVAQNQEIVHWCVKNGIDYKLYLPHYKSQEEWIRHFGNRWS
Template Known Secondary structure  GGGS
TTSS



SS
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TTS
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   419420.........430.........440.........450.........460.........470.........480.........490........
 
   540.........550.........560....
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Query Sequence  TLQKFYRENDPTNSMNPGIGKTSKR
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Template Sequence  RFVDRKAXFDPXAILSPGQKIFNRS
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TT

B
GGG
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   499500.........510.........520...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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