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Job DescriptionP77737
Confidence100.00%DateThu Jan 5 12:32:21 GMT 2012
Rank43Aligned Residues234
% Identity27%Templatec3b5xB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae
Resolution5.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  NAVTEGRKVLLEIADLKVHFEIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGHV
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Template Sequence  KYEAERVNGEVDVKDVTFTYQGKEK. . . . . . . . . . . PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI
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B

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   332.......340.........350...... ...360.........370.........380.........390.........400
 
   82.......90.........100.........110.........120.........130.........140.........150... .....
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Query Sequence  AWLGKELLGMKPDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGL. . . LPNLI
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Template Sequence  CLDGHDVRDYKLT. . . NLRRHFALVSQNVH. . LFND. TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVI
Template Known Secondary structure  TTSTTS
SS...SSSTT

SS

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TT.
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STTTSTTTTTTSSSS
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   401........410... ......420....... ..430. ........440.........450.........460.........470....
 
   159160.........170.........180.........190.........200.........210.........220.........230........
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Query Sequence  NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM
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Template Sequence  GENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK. . NKTVLVIAHRLSTI. EQADEILVV
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SS
SSS
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SS

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GGGG.GT
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   475....480.........490.........500.........510.........520........ .530.........540.. .......550.
 
   239240.........250.....
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Query Sequence  YLGHAVELGTYDEVYHN
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Template Sequence  DEGEIIERGRHADLLAQ
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SS


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   552.......560........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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