Job Description P77737 Confidence 100.00% Date Thu Jan 5 12:32:21 GMT 2012 Rank 42 Aligned Residues 244 % Identity 26% Template c3b5wE_ PDB info PDB header:membrane protein Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba Resolution 5.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	V	T	E	G	R	K	V	L	L	E	I	A	D	L	K	V	H	F	E	I	K	D	G	K	Q	W	F	W	Q	P	P	K	T	L	K	A	V	D	G	V	T	L	R	L	Y	E	G	E	T	L	G	V	V	G	E	S	G	C	G	K	S	T	F	A	R	A	I	I	G	L	V	K	A	T	D	G	H	V
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	R	V	I	E	R	A	T	G	D	V	E	F	R	N	V	T	F	T	Y	P	G	R	D	V	.	.	.	.	.	.	.	.	.	.	.	P	A	L	R	N	I	N	L	K	I	P	A	G	K	T	V	A	L	V	G	R	S	G	S	G	K	S	T	I	A	S	L	I	T	R	F	Y	D	I	D	E	G	E	I
Template Known Secondary structure		S						S							S	S		B		B		S	S	S	S		.	.	.	.	.	.	.	.	.	.	.	B	S	S		S							T	T							S	S	T	T	S	S								T	T	T		S			B	S	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.												.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.																								.
Query SS confidence																																																	.	.																								.
Query Sequence		A	W	L	G	K	E	L	L	G	M	K	P	D	E	W	R	A	V	R	S	D	I	Q	M	I	F	Q	D	P	L	A	S	L	N	P	R	M	T	I	G	E	I	I	A	E	P	L	.	.	R	T	Y	H	P	K	M	S	R	Q	E	V	R	E	R	V	K	A	M	M	L	K	V	.	G	L	L	P	N	L	I
Query Conservation																																																	.	.																								.
Alig confidence															.	.	.														.	.	.																.	.																								.
Template Conservation															.	.	.														.	.	.
Template Sequence		L	M	D	G	H	D	L	R	E	Y	T	L	A	.	.	.	S	L	R	N	Q	V	A	L	V	S	Q	N	V	.	.	.	H	L	F	N	D	T	V	A	N	N	I	A	Y	A	R	T	E	Q	Y	S	R	E	Q	I	E	E	A	A	R	M	A	Y	A	M	D	F	I	N	K	M	D	N	G	L	D	T	V	I
Template Known Secondary structure				S	S	S	B	T	T	T	S				.	.	.				T	T						S			.	.	.				S	S		B	S	T	T	T	T	S	S	S	S	T	T	S			T	T					T	T	T	T	S	T					T	T	S	S	S	S	S	B
Template Predicted Secondary structure															.	.	.														.	.	.
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.				.	.	.	.	.	.	420	.	.	.	.	.	.				.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	R	Y	P	H	E	F	S	G	G	Q	C	Q	R	I	G	I	A	R	A	L	I	L	E	P	K	L	I	I	C	D	E	P	V	S	A	L	D	V	S	I	Q	A	Q	V	V	N	L	L	Q	Q	L	Q	R	E	M	G	L	S	L	I	F	I	A	H	D	L	A	V	V	K	H	I	S	D	R	V	L	V	M
Query Conservation
Alig confidence																																																								.	.													.
Template Conservation																																																								.	.													.
Template Sequence		G	E	N	G	V	L	L	S	G	G	Q	R	Q	R	I	A	I	A	R	A	L	L	R	D	S	P	I	L	I	L	D	E	A	T	S	A	L	D	T	E	S	E	R	A	I	Q	A	A	L	D	E	L	Q	K	.	.	N	R	T	S	L	V	I	A	H	R	L	S	.	T	I	E	K	A	D	E	I	V	V	V
Template Known Secondary structure			T	T	S		S	S										T					T	S			S							T	T	S	S									T	T					T	T	T	S	.	.	S	S							S	S	G	G	.	G	T	T	T		S	S	B
Template Predicted Secondary structure																																																								.	.													.
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.			.	530	.	.	.	.	.	.	.	.	.	540		.	.	.	.	.	.	.	.	.	550	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	G	H	A	V	E	L	G	T	Y	D	E	V	Y	H	N	P	L	H	P	Y	T	R	A	L	M	S	A
Query Conservation
Alig confidence																		.	.
Template Conservation																		.	.
Template Sequence		E	D	G	V	I	V	E	R	G	T	H	N	D	L	L	E	.	.	H	R	G	V	Y	A	Q	L	H	K	M
Template Known Secondary structure			T	T							S	S	S					.	.	S		S	S						T	T
Template Predicted Secondary structure																		.	.
Template SS confidence
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.			.	.	570	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions