Job Description P77737 Confidence 98.58% Date Thu Jan 5 12:32:21 GMT 2012 Rank 88 Aligned Residues 199 % Identity 18% Template c3auyB_ PDB info PDB header:recombination Chain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: crystal structure of rad50 bound to adp Resolution 2.70 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.													.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	A	V	D	G	V	T	L	R	L	Y	E	G	E	T	L	G	V	V	G	E	S	G	C	G	K	S	T	F	A	R	A	I	I	.	.	.	.	.	.	.	.	.	.	.	.	G	L	V	K	A	T	D	G	H	V	A	W	L	G	K	E	L	L	G	M	K	P	D	E	W	R	A	V	R	S	D	I	Q
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.
Template Sequence		F	K	S	H	V	N	S	R	I	K	F	E	K	G	.	I	V	A	I	I	G	E	N	G	S	G	K	S	S	I	F	E	A	V	F	F	A	L	F	G	A	G	S	F	N	Y	D	T	I	I	T	K	G	K	K	S	V	Y	V	E	L	D	F	E	V	N	G	N	N	Y	K	I	I	R	E	Y	D	S	G	R
Template Known Secondary structure			T	T										S		.								T	T	S	S															S					G	G	G	T	B		T	T		S											T	T											T	T
Template Predicted Secondary structure																.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	I	F	Q	D	P	L	A	S	L	N	P	R	M	T	I	G	E	I	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	A	K	L	Y	K	N	G	K	P	Y	A	T	T	I	S	A	V	N	K	A	V	N	E	I	L	G	V	D	R	N	M	F	L	N	S	I	Y	I	K	Q	G	E	I	A	K	F	L	S	L	K	P	S	E	K	L	E	T	V	A	K	L	L	G	I	D	E	F	E	K	C	Y	Q	K	M	G	E	I	V
Template Known Secondary structure									T	T						S														S													T	T								S														T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
																																																										126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	L	R	T	Y	H	P	K	M	S	R	Q	E	V	R	E	R	V	K	A	M	M	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	E	Y	E	K	R	L	E	R	I	E	G	E	L	N	Y	N	L	E	K	E	K	E	K	L	T	K	F	V	E	Y	L	D	K	V	R	R	I	F	G	R	N	G	F	Q	A	Y	L	R	E	K	Y	V	P	L	I	Q	K	Y	L	N	E	A	F	S	E	F	D	L	P	Y	S	F	V	E	L	T	K	D	F
Template Known Secondary structure																			T	T																				T	T	T	T								T	T	T															T	T		S		S						T	T	T
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180								.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.
Query Sequence		K	V	G	L	L	P	N	L	I	N	R	Y	P	H	E	F	S	G	G	Q	C	Q	R	I	G	I	A	R	A	L	I	.	.	.	.	.	.	.	L	E	P	K	L	I	I	C	D	E	P	V	S	A	L	D	V	S	I	Q	A	Q	V	V	N	L	L	Q	Q	L	Q	R	E	M	G	L	S	L	I	F	I	A
Query Conservation																																	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.																																	.	.
Template Conservation																																																																								.	.
Template Sequence		E	V	R	V	H	A	P	N	G	V	L	T	I	D	N	L	S	G	G	E	Q	I	A	V	A	L	S	L	R	L	A	I	A	N	A	L	I	G	N	R	V	E	C	I	I	L	D	E	P	T	V	Y	L	D	E	N	R	R	A	K	L	A	E	I	F	R	K	V	K	S	.	.	I	P	Q	M	I	I	I	T
Template Known Secondary structure								T	T					G	G	G	S																						S	S			S						S	T	T	T	T																		S	.	.	S	S
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.			970	.	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	L	A	V	V	K	H	I	S	D	R	V	L	V	M	Y
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		H	H	R	E	.	L	E	D	V	A	D	V	I	I	N	V	K
Template Known Secondary structure		S		G	G	.	G	G	G	G		S
Template Predicted Secondary structure						.
Template SS confidence
		978	.	980	.		.	.	.	.	.	.	.	.	990	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions