Job Description P76037 Confidence 92.95% Date Thu Jan 5 12:17:36 GMT 2012 Rank 7 Aligned Residues 335 % Identity 9% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.						.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																												.									.	.	.	.	.
Query SS confidence																												.									.	.	.	.	.
Query Sequence		H	V	P	A	S	Y	L	L	A	L	A	G	V	L	F	T	A	I	S	Y	G	K	L	V	R	Q	.	F	P	E	A	G	S	A	Y	.	.	.	.	.	T	Y	A	Q	K	S	I	N	P	H	V	G	F	M	V	G	W	S	S	L	L	D	Y	L	F	L	P	M	I	N	V	L	L	A	K	I	Y	L	S	A
Query Conservation																												.									.	.	.	.	.
Alig confidence																												.									.	.	.	.	.
Template Conservation
Template Sequence		W	G	P	L	P	W	A	T	Y	S	F	L	S	V	A	F	A	Y	F	F	F	V	R	K	M	E	V	I	R	P	S	S	T	L	V	P	L	V	G	E	K	H	A	K	G	L	F	G	T	I	V	D	N	F	Y	L	V	A	L	I	F	A	M	G	T	S	L	G	L	A	T	P	L	V	T	E	C	M	Q	W
Template Known Secondary structure		T	S																				T	S						S	S	G	G	G	G		T	T	T		S	S		T	T	S	S																																	T	T
Template Predicted Secondary structure
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.									.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.							.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Query Sequence		L	F	P	E	V	P	P	W	V	W	V	V	T	F	V	A	I	L	T	A	A	N	L	K	.	.	.	.	.	.	.	.	S	V	N	L	V	A	N	F	N	T	L	F	V	L	V	Q	I	S	I	M	V	V	F	.	.	.	.	.	.	I	F	L	V	V	Q	G	L	H	K	G	E	G	V	G	T	V	W	S
Query Conservation																										.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Template Conservation
Template Sequence		L	F	G	I	P	H	T	L	Q	L	D	A	I	I	I	T	C	W	I	I	L	N	A	I	C	V	A	C	G	L	Q	K	G	V	R	I	A	S	D	V	R	S	Y	L	S	F	L	M	L	G	W	V	F	I	V	S	G	A	S	F	I	M	N	Y	F	T	D	S	V	G	M	L	L	M	Y	L	P	R	M	L
Template Known Secondary structure		S	T	T				T																				S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	P	F	I	S	E	N	A	H	L	I	P	I	I	T	G	A	T	I	V	C	F	S	F	L	G	F	D	A	V	T	T	L	S	E	E	T	P	D	A	A	R	V	I	P	K	A	I	F	L	T	A	V	Y	G	G	V	I	F	I	A	A	S	F	F	M	Q	L	F	F	P	D	I	S	R	F	K	D	P
Query Conservation
Alig confidence																																										.	.
Template Conservation																																										.	.
Template Sequence		F	Y	T	D	P	I	A	K	G	G	F	P	Q	G	W	T	V	F	Y	W	A	W	W	V	I	Y	A	I	Q	M	S	I	F	L	A	R	I	S	R	G	.	.	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I
Template Known Secondary structure		T					S	S								T											T											T		S	S	.	.																																			T	T	S
Template Predicted Secondary structure																																										.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
		274									.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.
Query Sequence		D	.	.	.	.	.	.	.	.	A	A	L	P	E	I	A	L	Y	V	G	G	K	L	F	Q	S	I	F	L	C	T	T	F	V	N	T	L	A	S	G	L	A	S	H	A	S	V	S	R	L	L	Y	V	M	G	R	D	N	V	F	P	E	R	V	F	G	Y	V	H	P	K	W	R	T	P	A	L	N	V	I
Query Conservation			.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.																																																						.	.	.	.
Template Conservation																																																																.	.	.	.
Template Sequence		N	I	P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	L	S	T	A	T	M	W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	R	D	G	.	.	.	.	E	E	P	P	L	L	V	R	I	G	W	S	I	L
Template Known Secondary structure								G	G	G												T	S	S	S	T	T																												T	T	S		S	S	S	S	S	.	.	.	.		S	S		S	T	T
Template Predicted Secondary structure																																																																.	.	.	.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.					.	.	.	.	.	.	.	.	450	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	V	G	I	V	A	L	S	A	L	F	F	D	L	V	T	A	T	A	L	I	N	F	G	A	L	V	A	F	T	F	V	N	L	S	V	F	N	H	F	W	R	R	K	G	M	N	K	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	I	I	G	I	V	L	L	A	L	G	G	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T	L	S	F	I	K	D	A	K	Q	N	W	K	D
Template Known Secondary structure														S	S																																T
Template Predicted Secondary structure
Template SS confidence
		456	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions