Job Description P76016 Confidence 98.07% Date Thu Jan 5 12:17:28 GMT 2012 Rank 116 Aligned Residues 138 % Identity 21% Template c3r4kD_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:transcriptional regulator, iclr family; PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution Resolution 2.46 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	A	S	I	Y	R	R	K	K	A	M	L	T	L	G	Q	A	A	L	E	D	A	W	E	Y	M	A	P	R	E	C	A	L	F	I	L	D	E	T	A	C	I	L	S	R	N	G	D	P	Q	T	L	Q	Q	L	S	A	L	G	F	N	D	G	T	Y	C	A	E	G	I	I	G	T	C	A	L	S	L	A
Query Conservation
Alig confidence																																																					.	.	.													.	.	.
Template Conservation																																																					.	.	.													.	.	.
Template Sequence		R	L	A	A	L	R	E	A	S	V	P	I	L	S	A	S	R	R	V	L	R	E	L	S	E	D	T	G	E	T	T	H	L	S	L	L	Q	G	E	Q	L	A	S	L	S	H	A	Y	S	S	R	.	.	.	N	A	T	K	V	X	X	E	D	A	E	V	.	.	.	L	T	F	H	G	T	A	S	G	L	A
Template Known Secondary structure											S																		S	S									T	T											S	S	.	.	.		S	S						T	T			.	.	.			T	T	T	S
Template Predicted Secondary structure																																																					.	.	.													.	.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.				130	.	.	.	.	.	.	.	.	.	140
		122	.	.	.	.	.																																						.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	S	G	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	T	M	A	D	Q	H	F	K	Q	V	L	W	N	W	A	F	C	A	T	P	L	F	D	S	K	G	R	L	T	G	T	I	A	L	A
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template Conservation																																																						.	.	.	.
Template Sequence		V	L	A	Y	S	E	P	S	F	V	D	A	V	L	A	A	P	L	T	A	R	T	P	Q	T	Q	T	D	P	A	A	I	R	A	E	I	A	E	V	R	R	T	G	L	A	Q	S	I	G	G	F	E	.	.	.	.	A	E	V	H	S	H	A	V	P	I	F	G	P	D	R	A	V	L	G	A	L	A	V	A
Template Known Secondary structure				T	T	S											S					S	S	T	T																			S						S	S	S	S	.	.	.	.	T	T											T	T	S
Template Predicted Secondary structure																																																						.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.					.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.
Query SS confidence												.	.	.	.
Query Sequence		C	P	V	E	Q	T	T	A	A	D	.	.	.	.	L	P	L	T	L	A	I	A	R	E	V	G	N	L	L
Query Conservation												.	.	.	.
Alig confidence												.	.	.	.
Template Conservation
Template Sequence		A	P	T	S	R	X	T	P	D	Q	K	R	T	I	P	P	A	L	R	A	A	G	L	S	L	T	E	R	I
Template Known Secondary structure				G	G	G																								T
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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