Job Description P76016 Confidence 98.14% Date Thu Jan 5 12:17:28 GMT 2012 Rank 111 Aligned Residues 105 % Identity 26% Template c3n70F_ PDB info PDB header:transport protein Chain: F: PDB Molecule:transport activator; PDBTitle: the crystal structure of the p-loop ntpase domain of the sigma-542 transport activator from e. coli to 2.8a Resolution 2.80 Å

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		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	Q	T	R	R	L	I	H	F	G	R	Q	A	A	R	S	S	F	P	V	L	L	C	G	E	E	G	V	G	K	A	L	L	S	Q	A	I	H	N	E	S	E	R	A	A	G	P	Y	I	A	V	N	C	E	L	Y	G	D	A	A	L	A	E	E	F	I	G	G	D	R	T	D	N	E	N	G	R	L	S
Query Conservation
Alig confidence																.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	E	W	I	N	Q	Y	R	R	R	L	Q	Q	L	.	.	.	.	.	.	.	W	L	Y	G	A	P	G	T	G	R	X	T	G	A	R	Y	L	H	.	.	.	.	.	.	.	.	.	F	V	Y	R	E	L	T	P	D	N	A	P	Q	L	N	D	F	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														T		.	.	.	.	.	.	.		B			S	S	S	T	T						T	T	T		.	.	.	.	.	.	.	.	.								T	T	T	S	T	T					T	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.								.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180										.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	E	L	A	H	G	G	T	L	F	L	E	K	I	E	Y	L	A	V	E	L	Q	S	A	L	L	Q	V	I	K	Q	G	V	I	T	R	L	D	A	R	R	L	I	P	I	D	V	K	V	I	A	T	T	T	A	D	L	A	M	L	V	E	Q	N	R	F	S	R	Q	L	Y	Y	A	L	H	A	F	E	I
Query Conservation
Alig confidence		.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	A	L	T	L	V	L	S	H	P	E	H	L	T	R	E	Q	Q	Y	H	L	V	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	S	D	T	S	L	V	E	L	A	A	S	N	H	I	I	A	E	L	Y	Y	C	F	A	X	T	Q	I
Template Known Secondary structure		.	.	.	.	.	.								S	G	G	G	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													S												T			B
Template Predicted Secondary structure		.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
								215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.																								.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		491	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	I	P	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	C	L	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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